View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14800_high_15 (Length: 227)
Name: NF14800_high_15
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_high_15 |
 | |
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| [»] chr8 (12 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 6320579 - 6320358
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6320579 |
agatatgggatgctatcaagtcatgggttgaagaatatgtgaatttctactacaagtcagatgttgctgttgcgcaagattctgaactgcaagcattttg |
6320480 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6320479 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcttgcactatcctc |
6320380 |
T |
|
| Q |
206 |
atatggattgcttcagcacatc |
227 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6320379 |
atatggattgcttcagcacatc |
6320358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 6331041 - 6330820
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6331041 |
agatatgggatgctatcaagtcatgggttgaagaatatgtgagtttctactacacgtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
6330942 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6330941 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcttgcactatcctc |
6330842 |
T |
|
| Q |
206 |
atatggattgcttcagcacatc |
227 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6330841 |
atatggattgcttcagcacatc |
6330820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 6362372 - 6362156
Alignment:
| Q |
8 |
atatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttgga |
107 |
Q |
| |
|
||||||| |||||| || || |||||||| |||||||| ||||||||||||||||||||||| || |||| |||||||||||||| |||||||| |||| |
|
|
| T |
6362372 |
atatgggctgctattaaatcatgggttgatgaatatgtcaatttctactacaagtcagatgcatctattgcacaagattctgaactccaagcattctgga |
6362273 |
T |
|
| Q |
108 |
gagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctcat |
207 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | |||||| |
|
|
| T |
6362272 |
aagaacttgtagaggtcggtcatggtgacttgaagaatgctacatggtggtttaagatgcaaactcgtgaggagttgattgaagcttgcaccaccctcat |
6362173 |
T |
|
| Q |
208 |
atggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6362172 |
atggattgcttcagcac |
6362156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 6273700 - 6273482
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||| |
|
|
| T |
6273700 |
agatatgggctgttattaagtcatgggttgaagaatatgtgaatttctactacaagtcagatgcaaatattggacaagattctgaactccaagcattttg |
6273601 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
|| |||| |||||||||| ||||| ||||| ||||| ||||||| ||||||| |||||||||||||| | |||||||||||||| | ||||||| |||| |
|
|
| T |
6273600 |
gaaagaacttgtagaggttggtcacggtgacttgaaaaatgctaaatggtgggttaagatgcaaactcgcacagagttgattgactcttgcactaccctc |
6273501 |
T |
|
| Q |
206 |
atatggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6273500 |
atatggattgcttcagcac |
6273482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 7458230 - 7458012
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||||||||||| ||||||||||| |
|
|
| T |
7458230 |
agatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcattttg |
7458131 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
|| |||| |||||||||||||||||||||| || | |||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||| || ||| |
|
|
| T |
7458130 |
gaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggtttaagatgcaaaaccgtacggagttgaaagaagcttgcaccattctc |
7458031 |
T |
|
| Q |
206 |
atatggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7458030 |
atatggattgcttcagcac |
7458012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 7470632 - 7470414
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||||||||||| ||||||||||| |
|
|
| T |
7470632 |
agatatgggctgctattaagtcatgggttgatgaatatgtgaatttctactacaagtctgatgcagatgttgtgaaagattctgaactccaagcattttg |
7470533 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
|| |||| |||||||||||||||||||||| || | |||||| ||||||||||||||||||| || |||| ||||||| ||||| ||||| || ||| |
|
|
| T |
7470532 |
gaaagaacttgtagaggtgggtcatggtgactttaggaatgcaacatggtggtttaagatgccaaaccgtacggagttgaaagaagcttgcaccattctc |
7470433 |
T |
|
| Q |
206 |
atatggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7470432 |
atatggattgcttcagcac |
7470414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 6423406 - 6423188
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
||||||||| |||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||||| |||| |||||| ||||||| |||||||| || |
|
|
| T |
6423406 |
agatatgggctgctatcaagacatgggttggagaatatgtgagtttctactacaaatcagatgctgccattgcacaagatgctgaactccaagcattctg |
6423307 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
|| ||| |||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||| || | |||||||| ||||| | ||| ||||| |
|
|
| T |
6423306 |
gaaggaacttgtagaggtgggtcatggtgacttaaagagtgccacatggtggtttaagatgcaaactcgtgcggagttgatcgaagcttccaccatcctt |
6423207 |
T |
|
| Q |
206 |
atatggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6423206 |
atatggattgcttcagcac |
6423188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 6287934 - 6287733
Alignment:
| Q |
23 |
aagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttggagagaagttgtagagg |
122 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||| |||||||| |||| |||| ||||||||| |
|
|
| T |
6287934 |
aagtcatgggttgaagaatatgtgtatttctactacaagtcagatgcaaatattgcacaagattctgaactccaagcattctggaaagaacttgtagagg |
6287835 |
T |
|
| Q |
123 |
tgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctcatatggattgcttcagc |
222 |
Q |
| |
|
| ||||| ||||| ||||| |||||| ||||||||||||||||||||| ||| ||||||||||| || ||||| |||||||||||||||||||| || |
|
|
| T |
6287834 |
taggtcacggtgacttgaaagatgctaaatggtggtttaagatgcaaacccgtaaggagttgattgaggcttgcaccatcctcatatggattgcttcggc |
6287735 |
T |
|
| Q |
223 |
ac |
224 |
Q |
| |
|
|| |
|
|
| T |
6287734 |
ac |
6287733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 6351487 - 6351271
Alignment:
| Q |
8 |
atatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttgga |
107 |
Q |
| |
|
||||||| ||| || ||||| ||||||| ||||||||||||||||| |||||||| |||||||| |||| |||||| ||||||| |||||||| |||| |
|
|
| T |
6351487 |
atatgggctgccattaagtcatgggttggtgaatatgtgaatttctattacaagtctgatgctgccattgcacaagatgctgaactccaagcattctgga |
6351388 |
T |
|
| Q |
108 |
gagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctcat |
207 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| ||||| | ||| ||||| || |
|
|
| T |
6351387 |
aggaacttgtagaggttggtcatggtgacctgaagaatgccacatggtggtttaagatgcaaacccgtgaagagttgatcgaagcttccaccatccttat |
6351288 |
T |
|
| Q |
208 |
atggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6351287 |
atggattgcttcagcac |
6351271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 6409380 - 6409162
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||||| |||||||| |||||| |||||| |||||||| | ||||| || || |||||||| || |
|
|
| T |
6409380 |
agatatgggctgctattaagtcatgggttgaagaatatgtaaatttctattacaagctagatgcagctgttgcagatgattccgagctccaagcattctg |
6409281 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
|| |||| ||||||| ||||| |||||||| |||||| |||| |||||||||||||||||| ||||| || |||||||||||||| | ||||| | |||| |
|
|
| T |
6409280 |
gaaagaacttgtagaagtgggccatggtgacttgaaggatgcaacatggtggtttaagatgaaaactcgtgcagagttgattgaaacttgcaccaccctc |
6409181 |
T |
|
| Q |
206 |
atatggattgcttcagcac |
224 |
Q |
| |
|
|| ||||| |||||||||| |
|
|
| T |
6409180 |
atttggatggcttcagcac |
6409162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 6390128 - 6389913
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||| | |||| | ||| ||||| |||||||||| |
|
|
| T |
6390128 |
agatatgggctgctattaagtcatgggttgatgaatatgtcaatttctactacaagtcagataaagatgttaaagatgatgaggaactcaaagcattttg |
6390029 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
|| |||| ||||||| |||||||||||||| | ||||| || || |||| |||| || ||||| ||||||||||||||||| | ||||| | |||| |
|
|
| T |
6390028 |
gaaagaacttgtagaagtgggtcatggtgactcgaagactgata---agtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctc |
6389932 |
T |
|
| Q |
206 |
atatggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6389931 |
atatggattgcttcagcac |
6389913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 6369146 - 6368931
Alignment:
| Q |
6 |
agatatgggatgctatcaagtcttgggttgaagaatatgtgaatttctactacaagtcagatgctgctgttgcgcaagattctgaactgcaagcattttg |
105 |
Q |
| |
|
||||||||| |||||| ||||| |||||||| |||||||| |||||||| ||| |||||||| | |||| | ||| ||||| |||||||||| |
|
|
| T |
6369146 |
agatatgggctgctattaagtcatgggttgatgaatatgtcaatttctattacgagtcagataaagatgttaaagatgatgaggaactcaaagcattttg |
6369047 |
T |
|
| Q |
106 |
gagagaagttgtagaggtgggtcatggtgatttgaagaatgctacatggtggtttaagatgcaaacttgtacagagttgattgaagcctgcactatcctc |
205 |
Q |
| |
|
|| |||| ||||||| || ||||||||||| ||||||| || || |||| |||| || ||||| ||||||||||||||||| | ||||| | |||| |
|
|
| T |
6369046 |
gaaagaacttgtagaagtaggtcatggtgacttgaagactgataa---gtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctc |
6368950 |
T |
|
| Q |
206 |
atatggattgcttcagcac |
224 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6368949 |
atatggattgcttcagcac |
6368931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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