View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14800_high_5 (Length: 460)
Name: NF14800_high_5
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 24059114 - 24058682
Alignment:
| Q |
19 |
aaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
24059114 |
aaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtgccctttttatggcagcttaatgcccaaaatg |
24059015 |
T |
|
| Q |
119 |
ccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24059014 |
ccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttctt |
24058915 |
T |
|
| Q |
219 |
agtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggaccctttttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24058914 |
agtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggaccctttttt |
24058815 |
T |
|
| Q |
319 |
gatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24058814 |
gatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgtcttcacatcacggtgaattatgctttgtttagctccagtgt |
24058715 |
T |
|
| Q |
419 |
gaagataaagaagtcctttcgcagcccctatgc |
451 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
24058714 |
gaagataaagaagtcctttcgcagccccgatgc |
24058682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 30730909 - 30730480
Alignment:
| Q |
19 |
aaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatg |
118 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||| |||| |
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|
| T |
30730909 |
aaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccgcaatg |
30730810 |
T |
|
| Q |
119 |
ccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttctt |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| |||||||||||||||| |
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|
| T |
30730809 |
ccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttctt |
30730710 |
T |
|
| Q |
219 |
agtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggaccctttttt |
318 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
30730709 |
agttagaaatttagtcctaaaatattctggatcaacttagccaaaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttc |
30730610 |
T |
|
| Q |
319 |
gatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgt |
418 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30730609 |
gatatgccaaaatcagaaacttttggcacaatctttttgtccaagagaatgtttgttgtcttcacgtcacggtgaattatgctttgtttagctccagtgt |
30730510 |
T |
|
| Q |
419 |
gaagataaagaagtcctttcgcagccccta |
448 |
Q |
| |
|
||||||| | |||||| || |||||||||| |
|
|
| T |
30730509 |
gaagatataaaagtccctttgcagccccta |
30730480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 33872813 - 33872733
Alignment:
| Q |
324 |
gccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttg |
404 |
Q |
| |
|
|||||| ||||||||||| | |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||| ||||| |
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|
| T |
33872813 |
gccaaagtcagcaactttagcaacaaagttatcatctaaaagaatgtttgtcgtctttacatctcggtgaattatactttg |
33872733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 14670911 - 14671340
Alignment:
| Q |
19 |
aaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatg |
118 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
14670911 |
aaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatg |
14671010 |
T |
|
| Q |
119 |
ccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttctt |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| |||||||||||||||| |
|
|
| T |
14671011 |
ccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttctt |
14671110 |
T |
|
| Q |
219 |
agtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggaccctttttt |
318 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
14671111 |
agttagaaacttagtcctaaaatattcaggatcaacatagccaaaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttc |
14671210 |
T |
|
| Q |
319 |
gatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||| |
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|
| T |
14671211 |
gatatgccaaaatcagcaacttttggtacaagattttcgtccaagagaatgtttgttgtctttatgtcacggtgaattatgctttctttagctccagtgt |
14671310 |
T |
|
| Q |
419 |
gaagataaagaagtcctttcgcagccccta |
448 |
Q |
| |
|
||||||| | |||||| || |||||||||| |
|
|
| T |
14671311 |
gaagatataaaagtccctttgcagccccta |
14671340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 14685402 - 14684987
Alignment:
| Q |
19 |
aaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatg |
118 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| ||| ||||||||||| | || |
|
|
| T |
14685402 |
aaaaccttgtttagagaatccatattcactttgccaatcaaaaatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacattg |
14685303 |
T |
|
| Q |
119 |
ccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttctt |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| |||||||||||||||| |
|
|
| T |
14685302 |
ccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttctt |
14685203 |
T |
|
| Q |
219 |
agtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggaccctttttt |
318 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
14685202 |
agttagaaatgtagtcctaaaatattcaggatcaacatagccaaaactaccctttacattcgttgtaacgtgactcttatcaagaattggaccctttttc |
14685103 |
T |
|
| Q |
319 |
gatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14685102 |
gatatgccaaaatcagcaacttttggcacaagattttcgtccaagagaatgtttgctgtcttcacatcacggtgaattatgctttgtttagctccagtgt |
14685003 |
T |
|
| Q |
419 |
gaagataaagaagtcc |
434 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
14685002 |
gaagatataaaagtcc |
14684987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 14705092 - 14704884
Alignment:
| Q |
19 |
aaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatg |
118 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
14705092 |
aaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatg |
14704993 |
T |
|
| Q |
119 |
ccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttctt |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || | ||| |||||||||||||||| |
|
|
| T |
14704992 |
ccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccataagagaaaacatctgatttctt |
14704893 |
T |
|
| Q |
219 |
agtaagaaa |
227 |
Q |
| |
|
||| ||||| |
|
|
| T |
14704892 |
agttagaaa |
14704884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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