View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14800_high_6 (Length: 433)
Name: NF14800_high_6
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 48404237 - 48403819
Alignment:
| Q |
1 |
agacgagcaggggcaagttcaggcatctatgataataatgtgtctgacaccgacagaatgtgtatgcagttgttccttgatattcaggtaggcatgatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48404237 |
agacgagcaggggcaagttcaggcatctatgataataatgtgtctgacaccgacagaatgtgtatgcagttgttccttgatattcaggtaggcatgatac |
48404138 |
T |
|
| Q |
101 |
ttgcacatgcaacatgcaagacatggatgccttgattttgaaatgattttttaaactcaatgtcctgcaaactgtgaattctttcttttagataataacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48404137 |
ttgcacatgcaacatgcaagacatggatgccttgattttgaaatgattttttaaactcaatgtcctgcaaactgtgaattctttcttttagataataacc |
48404038 |
T |
|
| Q |
201 |
ttcatcttgcgtattgtcaccaggagtatgcccgtaatctctctgcgctaggggttgaggcagtcaatattgcatcctttagttcattatggcagtctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48404037 |
ttcatcttgcgtattgtcaccaggagtatgcccgtaatctctctgcgctaggggttgaggcagtcaatattgcatcctttagttcattatggcagtctgt |
48403938 |
T |
|
| Q |
301 |
ggctccagcagataagcagaacacaattaaattataagagtttgcatctgcgatgcggcttgtaggttgattgctttcttgtgtggttaagattttcttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48403937 |
ggctccagcagataagcagaacacaattaaattataagagtttgcatctgtgatgcggcttgtaggttgattgctgtcttgtgtggttaagattttcttg |
48403838 |
T |
|
| Q |
401 |
tgtaacttaaccatgaaat |
419 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48403837 |
tgtaacttaaccatgaaat |
48403819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 42831014 - 42831437
Alignment:
| Q |
1 |
agacgagcaggggcaagttcaggcatctatgataataatgtgtctgacaccgacagaatgtgtatgcagttgttccttgatattcaggtaggcatgatac |
100 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42831014 |
agacgagcagggacaagttctggcatctccgataataatgtgtctgacactgacagaatgtgtatgcagttcttccttgatattcaggtaggcatgatac |
42831113 |
T |
|
| Q |
101 |
ttgcacatgcaacatgcaagacatggatgccttgattttgaaatgattttttaaactcaatgtcctgcaaactgtgaattctttcttttagataataacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
42831114 |
ttgcacatgcaacatgcaagacatggatgccatgattttgaaatgaatttt-aaagtcaatgtcctgcaaaccgtgaatgctttcttttagataataacc |
42831212 |
T |
|
| Q |
201 |
ttcatcttgcgtattgtcaccaggagtatgcccgtaatctctctgcgctaggggttgaggcagtcaatattgcatcctttagttcattatggcagtctgt |
300 |
Q |
| |
|
||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||| ||| |
|
|
| T |
42831213 |
ttcctcttacatattgtcaccaggagtatgcccgtaatctctctgcgctagggattgaagcaagcaatattgcatcctatcgttcattatggcagtgtgt |
42831312 |
T |
|
| Q |
301 |
ggctccagcagataagcagaacacaattaaattataagagtttgcatctg------cgatgcggcttgtaggttgattgctttcttgtgtggttaagatt |
394 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||||||||| || | ||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
42831313 |
ggctccagcagataggcagaacaacattaatttttaagagtttgcacgtgtggagtcaatgtggcttgtagattgattgctttcttgcttggttaagatt |
42831412 |
T |
|
| Q |
395 |
ttcttgtgtaacttaaccatgaaat |
419 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42831413 |
ttcttgtgtaacttaaccatgaaat |
42831437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University