View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14800_low_1 (Length: 498)
Name: NF14800_low_1
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 482
Target Start/End: Complemental strand, 4642246 - 4641783
Alignment:
| Q |
20 |
taggctcggttgtgtacttactaatggttggcaagtcttttgcattctcgagaaatttgaaacctccatcagggcagcttatactcacctgcaattcaga |
119 |
Q |
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| T |
4642246 |
taggctcggttgtgtacttactaatggttggcaagtcttttgcattctcgagaaatttgaaacctccatcagggcagcttatactcacctgcaattcaga |
4642147 |
T |
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| Q |
120 |
tggacgcacgaggttataaatcatatgatcaaggcagaaccattttaactatttaaaaagatcaattacagcatataaatcataagatcaaggcagaacc |
219 |
Q |
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| T |
4642146 |
tggacgcacgaggttataaatcatatgatcaaggcagaaccattttaactatttaaaaagatcaattacagcatataaatcatatgatcaaggcagaacc |
4642047 |
T |
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| Q |
220 |
atgataaatacgagtaacacatatgatgagattgacttcgcttagtactagattttcacaaattgaaagacaaatgaatcctttgcagaaagcatctttt |
319 |
Q |
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| T |
4642046 |
atgataaatacgagtaacacatatgatgagattgacttcgcttagtactagattttcacaaattgaaagacaaatgaatcctttgcagaaagcatctttt |
4641947 |
T |
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| Q |
320 |
agagtctaaacttctgcaggacacaaatataatcaagagaaccgtcaagttctccatattcacatcattttaattagcctgctatacaaaattcttttta |
419 |
Q |
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| T |
4641946 |
agagtctaaacttctgcaggacacaaatataatcaagagaaccgtcaagttctccatattcacatcattttaattagcctactagacaaaattcttttta |
4641847 |
T |
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| Q |
420 |
gtttat-ttttgctcgtggaaaatgaaagttcattacctccactatggcaacatggaagcattt |
482 |
Q |
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| T |
4641846 |
gtttattttttgctcgtggaaaatgaaagttcattacctccactatggcaacatggaagcattt |
4641783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 41031957 - 41031903
Alignment:
| Q |
32 |
tgtacttactaatggttggcaagtcttttgcattctcgagaaatttgaaacctcc |
86 |
Q |
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| T |
41031957 |
tgtacttactgatggttggtaagtccttggcattctcgagaaatctgaagcctcc |
41031903 |
T |
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