View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14800_low_11 (Length: 265)

Name: NF14800_low_11
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14800_low_11
NF14800_low_11
[»] chr8 (5 HSPs)
chr8 (17-249)||(4144521-4144753)
chr8 (28-248)||(4162885-4163105)
chr8 (28-242)||(4152532-4152749)
chr8 (28-247)||(4133727-4133946)
chr8 (42-242)||(4123199-4123399)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 4144521 - 4144753
Alignment:
Q  17 taaagaaaatttaccaagttctgctggcacacgaatgaagagatcaactccgccgttaggaaatttctgcaaatcaattaactccttactccaatacata 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  4144521 taaagaaaatttaccaagttctgccggcacacgaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacata 4144620  T
Q  117 caacctatagaaggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4144621 caacctatagaaggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaat 4144720  T
Q  217 caggaggtttcatattatgatgcaccaaaaatg 249  Q
    |||||||||||||||||||||||||||||||||    
T  4144721 caggaggtttcatattatgatgcaccaaaaatg 4144753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 4162885 - 4163105
Alignment:
Q  28 taccaagttctgctggcacacgaatgaagagatcaactccgccgttaggaaatttctgcaaatcaattaactccttactccaatacatacaacctataga 127  Q
    |||| ||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||  |||||||||||||||||| |||| |    
T  4162885 tacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaatacatacaacgtataaa 4162984  T
Q  128 aggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggtttc 227  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||| || || || |||||||||||  ||||||||||||||||    
T  4162985 aggatcatatgcataagccaaacaagaacaatttgccaaacaatctgttctacacttatctcgactaacatctgatctctcagcaaaatcaggaggtttc 4163084  T
Q  228 atattatgatgcaccaaaaat 248  Q
     ||||  ||||||||||||||    
T  4163085 gtattgggatgcaccaaaaat 4163105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 4152532 - 4152749
Alignment:
Q  28 taccaagttctgctggcacacgaatgaagagatcaactccgccgttaggaaatttctgcaaatcaattaactccttactccaatacatacaacctataga 127  Q
    |||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||   | ||||||||||||||  ||||||    
T  4152532 tacctagttctgccggcacacgaacgaagagatcaactccgccattaggaaatttctgcaaatcaattaactctccagtccaatacatacaaaatataga 4152631  T
Q  128 aggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattacc---agctgatctctcattaaaatcaggaggt 224  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| | |   |  || |||| |||||||||||||||||    
T  4152632 aggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatcagcattatttgttctcacattaaaatcaggaggt 4152731  T
Q  225 ttcatattatgatgcacc 242  Q
    ||||||||||||| ||||    
T  4152732 ttcatattatgatacacc 4152749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 4133727 - 4133946
Alignment:
Q  28 taccaagttctgctggcacacgaatgaagagatcaactccgccgttaggaaatttctgcaaatcaattaactccttactccaatacatacaacctataga 127  Q
    ||||||||||||| || ||||| ||||||||||||||||| || | |||||| || |||||| ||||||| ||   |||||||||||  ||||||||| |    
T  4133727 taccaagttctgccgggacacggatgaagagatcaactcctccatgaggaaagttttgcaaaccaattaagtctccactccaatacacgcaacctatata 4133826  T
Q  128 aggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggtttc 227  Q
    | |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4133827 acgatcatatgcatatgccaaacaagaacaatttaccaaacaatctgttctacatttatcttgattaccagctgatctctcattaaaatcaggaactttc 4133926  T
Q  228 atattatgatgcaccaaaaa 247  Q
    |||||  ||| |||||||||    
T  4133927 atattccgattcaccaaaaa 4133946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 4123199 - 4123399
Alignment:
Q  42 ggcacacgaatgaagagatcaactccgccgttaggaaatttctgcaaatcaattaactccttactccaatacatacaacctatagaaggatcatatgcat 141  Q
    ||||| |||||||||||||||||||| || | |||||||||||||||||||||||||||   | ||||||||||||||  ||||||||||||||||||||    
T  4123199 ggcactcgaatgaagagatcaactccaccataaggaaatttctgcaaatcaattaactctccagtccaatacatacaaaatatagaaggatcatatgcat 4123298  T
Q  142 atgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggtttcatattatgatgcac 241  Q
    |||||||||||| |||||||||||||||||||  |||||| ||||||  || | ||  | ||||||||  ||||||||||  |||||||||||||| |||    
T  4123299 atgccaaacaagaacaatttgccaaacaatcttctccacacttatctatatcaacatttaatctctcagcaaaatcaggaactttcatattatgatacac 4123398  T
Q  242 c 242  Q
    |    
T  4123399 c 4123399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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