View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14800_low_12 (Length: 262)

Name: NF14800_low_12
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14800_low_12
NF14800_low_12
[»] chr1 (28 HSPs)
chr1 (32-228)||(25585292-25585484)
chr1 (112-230)||(15417801-15417919)
chr1 (113-230)||(24134608-24134725)
chr1 (112-220)||(50011500-50011608)
chr1 (115-226)||(47651868-47651978)
chr1 (109-227)||(50065000-50065118)
chr1 (110-229)||(8893851-8893970)
chr1 (115-230)||(48497197-48497312)
chr1 (112-230)||(49619965-49620083)
chr1 (110-227)||(2017672-2017788)
chr1 (107-227)||(25421842-25421963)
chr1 (128-230)||(25031481-25031583)
chr1 (146-228)||(42937215-42937297)
chr1 (150-219)||(12148568-12148637)
chr1 (129-230)||(30735838-30735939)
chr1 (115-227)||(14262708-14262820)
chr1 (112-228)||(34702299-34702415)
chr1 (110-230)||(43109222-43109342)
chr1 (117-228)||(50302837-50302948)
chr1 (129-222)||(52164363-52164456)
chr1 (112-224)||(25800323-25800435)
chr1 (110-228)||(12973264-12973382)
chr1 (124-190)||(22386260-22386326)
chr1 (112-230)||(40061436-40061554)
chr1 (115-228)||(7438617-7438730)
chr1 (150-230)||(10123037-10123117)
chr1 (184-228)||(20267877-20267921)
chr1 (136-228)||(52720701-52720793)
[»] chr8 (23 HSPs)
chr8 (124-230)||(1360119-1360224)
chr8 (113-226)||(1032564-1032677)
chr8 (111-220)||(12831562-12831671)
chr8 (141-230)||(43413870-43413959)
chr8 (109-197)||(30466669-30466757)
chr8 (110-226)||(38063968-38064084)
chr8 (124-227)||(38289222-38289325)
chr8 (110-225)||(41454816-41454931)
chr8 (129-230)||(4259869-4259970)
chr8 (109-220)||(23139064-23139177)
chr8 (149-228)||(34037934-34038013)
chr8 (111-217)||(44828429-44828536)
chr8 (165-206)||(5598086-5598127)
chr8 (165-206)||(5637148-5637189)
chr8 (124-225)||(33820384-33820485)
chr8 (115-228)||(45536714-45536827)
chr8 (149-228)||(8350466-8350546)
chr8 (129-197)||(36103939-36104007)
chr8 (124-228)||(39104612-39104715)
chr8 (124-227)||(22652688-22652791)
chr8 (112-166)||(13906674-13906728)
chr8 (124-220)||(5904368-5904464)
chr8 (183-227)||(6938625-6938669)
[»] chr6 (15 HSPs)
chr6 (112-228)||(29321962-29322078)
chr6 (111-230)||(6228244-6228363)
chr6 (112-230)||(18903351-18903469)
chr6 (109-228)||(4854292-4854411)
chr6 (124-227)||(25091086-25091189)
chr6 (124-230)||(19748104-19748209)
chr6 (113-230)||(20415546-20415663)
chr6 (141-226)||(31637366-31637451)
chr6 (114-230)||(17216953-17217069)
chr6 (124-228)||(24794881-24794985)
chr6 (112-166)||(15717061-15717115)
chr6 (129-207)||(21874228-21874306)
chr6 (124-220)||(32470689-32470786)
chr6 (146-230)||(3974468-3974552)
chr6 (124-228)||(11552876-11552980)
[»] chr3 (21 HSPs)
chr3 (110-230)||(33528189-33528309)
chr3 (124-230)||(47864641-47864747)
chr3 (112-220)||(2259150-2259257)
chr3 (111-230)||(16141337-16141456)
chr3 (129-228)||(38668138-38668237)
chr3 (111-230)||(50381706-50381825)
chr3 (146-228)||(985905-985987)
chr3 (115-228)||(39739270-39739383)
chr3 (112-219)||(46247253-46247363)
chr3 (141-228)||(31435487-31435574)
chr3 (129-224)||(33830358-33830453)
chr3 (124-230)||(9320943-9321049)
chr3 (146-228)||(44062028-44062109)
chr3 (129-230)||(27817052-27817152)
chr3 (152-228)||(29645813-29645889)
chr3 (113-220)||(29226320-29226427)
chr3 (171-222)||(40415554-40415605)
chr3 (124-230)||(22602187-22602293)
chr3 (112-166)||(36590383-36590437)
chr3 (112-166)||(55426107-55426161)
chr3 (111-167)||(34225187-34225243)
[»] chr7 (23 HSPs)
chr7 (112-230)||(48433694-48433812)
chr7 (116-220)||(12166079-12166183)
chr7 (111-227)||(38378211-38378327)
chr7 (111-220)||(40273813-40273922)
chr7 (110-229)||(23824577-23824695)
chr7 (113-228)||(43440683-43440798)
chr7 (129-230)||(3961392-3961493)
chr7 (129-227)||(48619807-48619904)
chr7 (112-217)||(33248799-33248904)
chr7 (112-220)||(24029978-24030086)
chr7 (115-230)||(27454007-27454123)
chr7 (141-220)||(34322018-34322097)
chr7 (132-230)||(4956076-4956174)
chr7 (124-218)||(41468841-41468934)
chr7 (124-229)||(31793473-31793578)
chr7 (112-228)||(26455991-26456107)
chr7 (124-228)||(42554639-42554743)
chr7 (183-230)||(28914861-28914908)
chr7 (183-229)||(3889785-3889831)
chr7 (183-228)||(37563237-37563282)
chr7 (111-228)||(46266660-46266777)
chr7 (124-228)||(24315340-24315443)
chr7 (152-220)||(42841775-42841843)
[»] chr4 (17 HSPs)
chr4 (115-230)||(22341846-22341961)
chr4 (112-230)||(50815700-50815818)
chr4 (110-230)||(51974738-51974858)
chr4 (124-230)||(11491203-11491309)
chr4 (113-230)||(40406944-40407062)
chr4 (110-229)||(2832056-2832175)
chr4 (115-230)||(16556447-16556562)
chr4 (124-227)||(35909015-35909119)
chr4 (112-220)||(46283115-46283223)
chr4 (146-219)||(53096518-53096592)
chr4 (112-205)||(23448966-23449059)
chr4 (141-228)||(25234844-25234931)
chr4 (115-230)||(36993037-36993152)
chr4 (111-197)||(27862848-27862934)
chr4 (174-228)||(49607931-49607985)
chr4 (141-230)||(45355702-45355790)
chr4 (141-230)||(45369443-45369531)
[»] chr5 (14 HSPs)
chr5 (113-230)||(31250141-31250258)
chr5 (110-220)||(38503251-38503361)
chr5 (124-227)||(43227871-43227974)
chr5 (146-220)||(930932-931006)
chr5 (121-228)||(1572112-1572219)
chr5 (112-230)||(4395835-4395953)
chr5 (115-227)||(3867741-3867852)
chr5 (111-227)||(15470608-15470724)
chr5 (124-230)||(17077366-17077472)
chr5 (141-230)||(33545371-33545459)
chr5 (141-228)||(26671605-26671692)
chr5 (141-228)||(26943202-26943289)
chr5 (112-166)||(12375460-12375514)
chr5 (139-228)||(5039700-5039789)
[»] scaffold0001 (1 HSPs)
scaffold0001 (112-230)||(419705-419823)
[»] chr2 (14 HSPs)
chr2 (113-224)||(33482632-33482743)
chr2 (131-230)||(17543074-17543173)
chr2 (141-227)||(3330188-3330274)
chr2 (124-230)||(34107500-34107605)
chr2 (129-217)||(6866518-6866606)
chr2 (112-227)||(25553133-25553247)
chr2 (124-230)||(33065241-33065347)
chr2 (184-230)||(17376438-17376484)
chr2 (141-230)||(5901815-5901904)
chr2 (129-226)||(31149090-31149186)
chr2 (109-230)||(41749937-41750057)
chr2 (146-230)||(18424136-18424220)
chr2 (141-228)||(42678310-42678397)
chr2 (170-215)||(10185414-10185459)
[»] scaffold0072 (1 HSPs)
scaffold0072 (146-220)||(17727-17801)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 25585484 - 25585292
Alignment:
Q  32 actcagaaccataacaattccattaactaaaatagttgtttagttaaatctagttacattgttaaaagaaaccaaacattgtccccatgaaattagttca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||  ||||||||    
T  25585484 actcagaaccataacaattccattaactaaaatagttgtttagttaaatctag----attgttaaaagaaaccaaacattatccccatgagcttagttca 25585389  T
Q  132 tttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  25585388 tttggtaaaggatgatgcacaatatgtgcaggggctagagttcaaatctcagataccctacttatttatcttacaggtgaatttctctaaccactag 25585292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 15417919 - 15417801
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| ||||||| |||||||||||||| ||||||||| |||| || ||| ||||||| ||||||| || || ||| |||    
T  15417919 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaagctcggacaccccacttattcatctttaagatga 15417820  T
Q  212 atttctctaaccactaggc 230  Q
    |||||||||  ||||||||    
T  15417819 atttctctagtcactaggc 15417801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 24134725 - 24134608
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 212  Q
    |||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||||    
T  24134725 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaa 24134626  T
Q  213 tttctctaaccactaggc 230  Q
    |||||||| |||||||||    
T  24134625 tttctctagccactaggc 24134608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 50011500 - 50011608
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||| |||||||||||||||||||||||| |||| || | |||||| || ||||||| || || |||||||    
T  50011500 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacatcccacttattcatctttaaggtga 50011599  T
Q  212 atttctcta 220  Q
    |||||||||    
T  50011600 atttctcta 50011608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 47651868 - 47651978
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||  |||| |||||||| || |||| |||||||||||||||||||||||| |||| ||||  ||||| || ||||||| ||||| ||||||||||    
T  47651868 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaatcctagacatcccacttattcatttt-aaggtgaatt 47651966  T
Q  215 tctctaaccact 226  Q
    |||||| |||||    
T  47651967 tctctagccact 47651978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 50065000 - 50065118
Alignment:
Q  109 attgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaagg 208  Q
    ||||||||||| |  |||| |||||||  || |||| ||||||||||||||||||| | || |||| |||||| ||||||| ||||||| || || ||||    
T  50065000 attgtccccataagcttagctcatttgataagggataatgcacaatatgtgcagggaccggggttcgaatctcggacaccccacttattcatctttaagg 50065099  T
Q  209 tgaatttctctaaccacta 227  Q
    |||||||||||| ||||||    
T  50065100 tgaatttctctagccacta 50065118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 8893851 - 8893970
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    |||||| |||||  ||||||||||||| || |||| ||||||||||||| ||||||  || |||| || | || |||||| ||||||| || || |||||    
T  8893851 ttgtccacatgagcttagttcatttggtaagggataatgcacaatatgtacaggggtcggggttcgaaccccaaacaccccacttattcatctttaaggt 8893950  T
Q  210 gaatttctctaaccactagg 229  Q
    ||||||||| ||||||||||    
T  8893951 gaatttctccaaccactagg 8893970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 48497312 - 48497197
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||  |||| |||||||| || |||| ||||||||||||||||||||| ||||||| |||| | ||||| | | ||||| || || ||||| ||||    
T  48497312 cccatgagtttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcgaatcccggacactccatttattcatctttaaggtaaatt 48497213  T
Q  215 tctctaaccactaggc 230  Q
    |||||| |||||||||    
T  48497212 tctctagccactaggc 48497197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 49619965 - 49620083
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||| ||||||||||||||||||||  || ||||| | | | ||||||| ||||||| || || || ||||    
T  49619965 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcagaccccggacaccccacttattcatctttaaagtga 49620064  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| |||||||||    
T  49620065 atttctctagccactaggc 49620083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 2017788 - 2017672
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    |||||| |||||  |||| |||||||| || |||| ||||||||||||||||  |||||| |||| |||| | ||||||| |||| || ||||| |||||    
T  2017788 ttgtcctcatgagcttagctcatttggtaagggataatgcacaatatgtgcataggctggggttcgaatcccggacaccccacttgttcatttt-aaggt 2017690  T
Q  210 gaatttctctaaccacta 227  Q
    ||||||||||| ||||||    
T  2017689 gaatttctctagccacta 2017672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 25421842 - 25421963
Alignment:
Q  107 acattgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttattta-ttttaa 205  Q
    |||||||||||||||  |||  |||||||| || |||  ||||||||| |||| ||||||||| ||||||| | ||||||| | ||||||| |  || ||    
T  25421842 acattgtccccatgagcttaactcatttggtaagggacaatgcacaatttgtgtaggggctggggttcaaaccccagacactccacttattcaccttaaa 25421941  T
Q  206 aggtgaatttctctaaccacta 227  Q
    ||||||||||||||||||||||    
T  25421942 aggtgaatttctctaaccacta 25421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 25031583 - 25031481
Alignment:
Q  128 ttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccacta 227  Q
    ||||||||| ||  ||| ||||| ||||||||||||||| || |||| |||  | ||||||| ||||||| || || |||||||||||||||| ||||||    
T  25031583 ttcatttggtaagagataatgcataatatgtgcaggggccggggttcgaattccggacaccccacttattcatctttaaggtgaatttctctagccacta 25031484  T
Q  228 ggc 230  Q
    |||    
T  25031483 ggc 25031481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 42937297 - 42937215
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||||||||||||||||| |||||||| ||  ||||||||| || ||||| || || |||||||||||||||  |||||||    
T  42937297 atgcacaatatgtgcaggggttggagttcgaacttcagacaccttatttattcatctttaaggtgaatttctctcgccactag 42937215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 12148637 - 12148568
Alignment:
Q  150 acaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctct 219  Q
    ||||||||||||||||  |||||||||| | ||||||||| ||||||| || || |||||||||||||||    
T  12148637 acaatatgtgcaggggtcggagttcaaaccccagacaccccacttattcatctttaaggtgaatttctct 12148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 30735838 - 30735939
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||||| || |||| ||||||||| ||||||||||| ||||||  || |   ||||||  ||||||| || | |||||||||||||||||||||||||    
T  30735838 tcatttggtaagggataatgcacaatttgtgcaggggccggagtttgaaccctggacaccacacttattcatctcaaaggtgaatttctctaaccactag 30735937  T
Q  229 gc 230  Q
    ||    
T  30735938 gc 30735939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 14262820 - 14262708
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    ||||||| ||||  |||||||  || |||| ||||||||||| ||||||||  || |||| || | | ||||||||||||||| || || ||||||||||    
T  14262820 cccatgagattaactcatttgataagggataatgcacaatatatgcaggggtcggggttcgaaccccggacaccctacttattcatctttaaggtgaatt 14262721  T
Q  215 tctctaaccacta 227  Q
    |||||| ||||||    
T  14262720 tctctagccacta 14262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 34702415 - 34702299
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||  ||||||| || || ||| |||    
T  34702415 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacacctcacttattcatctttaagatga 34702316  T
Q  212 atttctctaaccactag 228  Q
    |||||| || |||||||    
T  34702315 atttctttagccactag 34702299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 43109342 - 43109222
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||| ||||||  |||| |||||||| || |||| ||||| ||||||||||||||| || |||| || | | ||||||  | ||||| || || |||||    
T  43109342 ttgtctccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccggggttcgaaccccggacacctcatttattcatctttaaggt 43109243  T
Q  210 gaatttctctaaccactaggc 230  Q
    ||||||||||| |||||||||    
T  43109242 gaatttctctagccactaggc 43109222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 50302948 - 50302837
Alignment:
Q  117 catgaaattagttcatttggcaaaggatgatgcacaatatgtgcag-gggctggagttcaaatctcagacaccctacttatttattttaaaggtgaattt 215  Q
    |||||| |||| |||||||| || |||| ||||| ||||||||||| ||||||| |||| || | | ||||| ||||||||| || || |||||||||||    
T  50302948 catgaatttagctcatttggtaagggataatgcataatatgtgcagagggctggggttcgaacc-ctgacactctacttattcatctttaaggtgaattt 50302850  T
Q  216 ctctaaccactag 228  Q
    ||||| |||||||    
T  50302849 ctctagccactag 50302837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 52164456 - 52164363
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 222  Q
    |||||||| ||  ||| |||||||||||||||||||   || |||| |||  | ||||||| ||||||| ||||| ||||||||||||||||||    
T  52164456 tcatttggtaagagataatgcacaatatgtgcagggatcggggttcgaattccggacaccccacttattaatttttaaggtgaatttctctaac 52164363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 25800435 - 25800323
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||| ||||| |||||||||| || || |||| ||||||||| | || |||| | || |||| || | | ||||||| ||||||| || ||||||||||    
T  25800435 gtcccaatgaacttagttcattcggtaagggataatgcacaatttatgtagggtccggggttccaaccccggacaccccacttattcatcttaaaggtga 25800336  T
Q  212 atttctctaacca 224  Q
    |||||| ||||||    
T  25800335 atttctttaacca 25800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 12973382 - 12973264
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  |||| |||||||| || |||| ||||||||||| ||||||||| |   ||||||   | ||||||| ||||||| || || |||||    
T  12973382 ttgtccccatgagtttagctcatttggtaagggataatgcacaatatatgcaggggccgagattcaaactcctgacaccccacttattcatctttaaggt 12973283  T
Q  210 gaatttctctaaccactag 228  Q
     ||||||| || |||||||    
T  12973282 aaatttctttagccactag 12973264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 22386326 - 22386260
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccct 190  Q
    |||| |||||||| || |||| |||||||||||||||||||| ||| |||| || | ||||||||||    
T  22386326 ttagctcatttggtaagggattatgcacaatatgtgcaggggttggggttcgaaccccagacaccct 22386260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 40061436 - 40061554
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||  |||||||| || ||||  ||||||||||||  ||||||||| |||| ||   | ||||||| ||||||| || || ||||||     
T  40061436 gtccccatgagcttaactcatttggtaagggatagtgcacaatatgtataggggctggggttcgaactccggacaccccacttattcatctttaaggtgg 40061535  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| |||||||||    
T  40061536 atttctctagccactaggc 40061554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 7438617 - 7438730
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||  |||| |||||||| || |||| ||||||||| |||| |||||  || |||| ||   | ||||||| ||||||| || |||||||||||||    
T  7438617 cccatgagcttagctcatttggtaagggataatgcacaatttgtgtaggggtcggggttcgaactccggacaccccacttattcatcttaaaggtgaatt 7438716  T
Q  215 tctctaaccactag 228  Q
    ||| || |||||||    
T  7438717 tctttagccactag 7438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 10123117 - 10123037
Alignment:
Q  150 acaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||||||||| |||||  || |||| || | || |||||| ||||||| || || |||||||||||||||| |||||||||    
T  10123117 acaatatgtgtaggggtcggggttcgaaccccaaacaccccacttattcatctttaaggtgaatttctctagccactaggc 10123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 20267921 - 20267877
Alignment:
Q  184 acaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||| |||||||||  || ||||||||||||||||||||||||    
T  20267921 acaccccacttatttacctttaaggtgaatttctctaaccactag 20267877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 52720701 - 52720793
Alignment:
Q  136 gcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||| |||| ||||| ||| |||| |||| |||| |||| || | ||||||||  ||||||| || || || |||||||||||||||||||||    
T  52720701 gcaagggataatgcataatgtgtgtagggactggggttcgaaccccagacaccacacttattcatctttaaagtgaatttctctaaccactag 52720793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 1360224 - 1360119
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||| |||| || | | ||||||| ||||||| |||||||| ||||||||||||||||    
T  1360224 ttagctcatttggcaaaggataatgcacaatatgtgtaggggctggggttcgaaccccggacaccccacttattcattttaaa-gtgaatttctctaacc 1360126  T
Q  224 actaggc 230  Q
    |||||||    
T  1360125 actaggc 1360119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 1032564 - 1032677
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 212  Q
    |||||||||  |||| |||||||| || |||| |||||||||||||||||||||||| |||| || | ||||||||| ||||||| || || ||||||||    
T  1032564 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacaccccacttattcatctttaaggtgaa 1032663  T
Q  213 tttctctaaccact 226  Q
    |||||||| |||||    
T  1032664 tttctctagccact 1032677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 12831562 - 12831671
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||||||||  |||  |||||||| ||||||  ||||||||||||||||||| ||||||||| |||| |||||| || ||||| |||  ||||| |||    
T  12831562 tgtccccatgagtttaactcatttggtaaaggacaatgcacaatatgtgcagggtctggagttcgaatcccagacatcccacttaattaccttaaaagtg 12831661  T
Q  211 aatttctcta 220  Q
    ||||||||||    
T  12831662 aatttctcta 12831671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 43413959 - 43413870
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||| ||||||||| |||||||||||||| |||| |||| || |||||| ||||||| || || |||||||||||||||| |||||||||    
T  43413959 ggataatgcacaatttgtgcaggggctggggttcgaatcccaaacaccccacttattcatctttaaggtgaatttctctagccactaggc 43413870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 30466669 - 30466757
Alignment:
Q  109 attgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatt 197  Q
    |||||||||||||  |||| |||||||| || || | |||||||||||||||||||||||| |||| || ||||||||||| |||||||    
T  30466669 attgtccccatgagcttagctcatttggtaagggctaatgcacaatatgtgcaggggctggggttcgaacctcagacaccccacttatt 30466757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 38063968 - 38064084
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  ||| ||||||||| || |||| ||||||||| ||||||||| |||| | |  || | ||||||||| ||||||| || || |||||    
T  38063968 ttgtccccatgagcttaattcatttggtaagggataatgcacaatttgtgcagggactgggggttgaaccccagacaccccacttattcatctttaaggt 38064067  T
Q  210 gaatttctctaaccact 226  Q
    |||||||||||||||||    
T  38064068 gaatttctctaaccact 38064084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 38289325 - 38289222
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| ||||||||||||||||||||  || |||| || |||| |||||| ||||||| || || |||||||||||||||| ||    
T  38289325 ttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacctcaaacaccccacttattcatctttaaggtgaatttctctagcc 38289226  T
Q  224 acta 227  Q
    ||||    
T  38289225 acta 38289222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 41454931 - 41454816
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || || ||    
T  41454931 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaatgt 41454832  T
Q  210 gaatttctctaaccac 225  Q
    ||||||||||| ||||    
T  41454831 gaatttctctagccac 41454816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 4259869 - 4259970
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||| ||| ||||||| || || |||||||||||||||| |||||||    
T  4259869 tcatttggtaagggataatgcacaatatgtgcaggggccggggttccaaccccggactccccacttattcatctttaaggtgaatttctctagccactag 4259968  T
Q  229 gc 230  Q
    ||    
T  4259969 gc 4259970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 23139064 - 23139177
Alignment:
Q  109 attgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttatttta--aa 206  Q
    |||||||||||||  |||| ||||||| ||| |||| ||||||||| ||||||||||| |  |||| ||   ||||||||| ||||||| ||||||  ||    
T  23139064 attgtccccatgagcttagctcatttgacaagggataatgcacaatgtgtgcaggggccgaggttcgaacaccagacaccccacttattcattttattaa 23139163  T
Q  207 ggtgaatttctcta 220  Q
    ||||||||||||||    
T  23139164 ggtgaatttctcta 23139177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 34038013 - 34037934
Alignment:
Q  149 cacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||||||||||||||  ||||||| |||| |||||| || ||||||| || || || |||||||| ||||||||||||    
T  34038013 cacaatatgtgcagggggcggagttcgaatcccagacatcccacttattcatctttaaagtgaatttttctaaccactag 34037934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 44828536 - 44828429
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttat-tttaaaggt 209  Q
    |||||||||||  |||| |||||||| || |||| ||||||||| ||||||||| |||| |||| || | ||||||||  ||||||| || ||| |||||    
T  44828536 tgtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcagggtctggggttcgaaccccagacaccacacttattcatcttttaaggt 44828437  T
Q  210 gaatttct 217  Q
    ||||||||    
T  44828436 gaatttct 44828429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 5598086 - 5598127
Alignment:
Q  165 gctggagttcaaatctcagacaccctacttatttattttaaa 206  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  5598086 gctggagttcgaatctcagacaccccacttatttattttaaa 5598127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 5637189 - 5637148
Alignment:
Q  165 gctggagttcaaatctcagacaccctacttatttattttaaa 206  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  5637189 gctggagttcgaatctcagacaccccacttatttattttaaa 5637148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 33820485 - 33820384
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| |  |||| || |||||| ||||||| ||  || |||| |||| ||||||||| | ||||| || ||||||||||||||||||||||    
T  33820485 ttagctcatttggtatgggataatacacaatttgtgcagaggtcggggttcgaatcccagacaccccaattattcatcttaaaggtgaatttctctaacc 33820386  T
Q  224 ac 225  Q
    ||    
T  33820385 ac 33820384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 45536714 - 45536827
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||  |||| |||||||  || |||| ||||| ||| ||||||||||| ||||||| || | | ||||||| ||||||| || ||||  |||||||    
T  45536714 cccatgaggttaggtcatttgataagggataatgcaaaatttgtgcaggggccggagttcgaaccccggacaccccacttattcatcttaatagtgaatt 45536813  T
Q  215 tctctaaccactag 228  Q
    |||||| |||||||    
T  45536814 tctctagccactag 45536827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 8350466 - 8350546
Alignment:
Q  149 cacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttat-tttaaaggtgaatttctctaaccactag 228  Q
    |||||||| ||||||||| ||||||| || ||| ||||||| ||||||| || ||| ||| ||||||| ||||||||||||    
T  8350466 cacaatatatgcaggggccggagttcgaacctcggacaccccacttattcatcttttaagatgaatttatctaaccactag 8350546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 36104007 - 36103939
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatt 197  Q
    |||||||| ||||||| ||||||||||||||||||||| || |||| || | || |||||| |||||||    
T  36104007 tcatttggtaaaggataatgcacaatatgtgcaggggccggggttcgaaccccaaacaccccacttatt 36103939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 39104612 - 39104715
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| ||||||||||||||||| ||| || |||| || | | ||||||| ||||||| || || |||||| ||||||||| ||    
T  39104612 ttagctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccggacaccc-acttattcatctttaaggtggatttctctagcc 39104710  T
Q  224 actag 228  Q
    |||||    
T  39104711 actag 39104715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 22652688 - 22652791
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||  || |||| ||||| ||| ||||||||||| || |||| || | | ||||||| | ||||| || ||||||||||||||||||| ||    
T  22652688 ttagctcatttgataagggataatgcataatttgtgcaggggccggtgttcgaaccccggacaccccaattattcatgttaaaggtgaatttctctagcc 22652787  T
Q  224 acta 227  Q
    ||||    
T  22652788 acta 22652791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 13906728 - 13906674
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggc 166  Q
    ||||||||||  |||| |||||||| || |||| |||||||||||||||||||||    
T  13906728 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggc 13906674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 5904464 - 5904368
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 220  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||  || |||| || | | |||| || ||||||| || || ||| ||||||||||||    
T  5904464 ttagctcatttggtaaaagataatgcacaatatgtgcaggggacggggttcgaaccccggacatcccacttattcatctttaagatgaatttctcta 5904368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 6938669 - 6938625
Alignment:
Q  183 gacaccctacttatttattttaaaggtgaatttctctaaccacta 227  Q
    ||||||||| ||||||||||| ||  |||||||||||||||||||    
T  6938669 gacaccctatttatttatttttaaaatgaatttctctaaccacta 6938625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 29322078 - 29321962
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    |||| |||||| |||| |||||||| || |||| |||||||||||||||||||||||| |||| || | |||||| || |||||||||| || |||||||    
T  29322078 gtcctcatgaacttagatcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacatcccacttatttatctttaaggtga 29321979  T
Q  212 atttctctaaccactag 228  Q
    ||||||||| |||||||    
T  29321978 atttctctagccactag 29321962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 6228363 - 6228244
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||    
T  6228363 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtg 6228264  T
Q  211 aatttctctaaccactaggc 230  Q
    |||||||||| |||||||||    
T  6228263 aatttctctagccactaggc 6228244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 18903469 - 18903351
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| ||||||||||| |||| || |||||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||||    
T  18903469 gtccccatgagcttagctcatttggcaagggataatacacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtga 18903370  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| |||||||||    
T  18903369 atttctctagccactaggc 18903351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 4854411 - 4854292
Alignment:
Q  109 attgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaagg 208  Q
    |||||||||||||  |||| ||||||||||| |||| ||| ||||| ||||||||||| || |||| || | | ||||||| ||||||| || || ||||    
T  4854411 attgtccccatgagcttagctcatttggcaagggataatgtacaatgtgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaagg 4854312  T
Q  209 tgaatttctctaaccactag 228  Q
    | ||||||||||||||||||    
T  4854311 taaatttctctaaccactag 4854292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 25091189 - 25091086
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    ||||||||||||||||||||| ||||||||| ||| ||||| | || ||||  | ||| ||||||| ||||||| || |||||||||| |||||||| ||    
T  25091189 ttagttcatttggcaaaggataatgcacaatttgttcagggaccggggttcgtacctcggacaccccacttattcatcttaaaggtgattttctctagcc 25091090  T
Q  224 acta 227  Q
    ||||    
T  25091089 acta 25091086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 19748104 - 19748209
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| |||||||||||||||||||  ||| |||| || | | ||||||| ||||||| ||||| ||||||||||||||| |||    
T  19748104 ttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaaccacggacaccccacttattcatttt-aaggtgaatttctctgacc 19748202  T
Q  224 actaggc 230  Q
    |||||||    
T  19748203 actaggc 19748209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 20415663 - 20415546
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 212  Q
    |||||||||  |||| |||||| | || |||| |||||||||||||||||||||  | |||| || | | ||||||| ||||||| || || ||||||||    
T  20415663 tccccatgagtttagctcattttgtaagggataatgcacaatatgtgcaggggccagggttcgaaccccggacaccccacttattcatctttaaggtgaa 20415564  T
Q  213 tttctctaaccactaggc 230  Q
    |||||||| |||||||||    
T  20415563 tttctctagccactaggc 20415546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 31637366 - 31637451
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccact 226  Q
    |||| ||||||||||| ||||||||  || |||| |  ||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  31637366 ggataatgcacaatatttgcaggggtcggggttcgagcctcggacaccctacttatttatttttaaggtgaatttctctagccact 31637451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 17216953 - 17217069
Alignment:
Q  114 ccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaat 213  Q
    ||||||||  |||| |||||||| || |||| ||||| |||||||| |||||  ||||||| ||   | ||||||| ||||||| || || |||||||||    
T  17216953 ccccatgagcttagctcatttggtaagggataatgcataatatgtgtaggggtcggagttcgaactccggacaccccacttattcatctttaaggtgaat 17217052  T
Q  214 ttctctaaccactaggc 230  Q
    ||||||| |||||||||    
T  17217053 ttctctagccactaggc 17217069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 24794985 - 24794881
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| |||||||||||||||||||| |||  ||| || | | |||| || ||||||| || || ||| |||||||||||| ||    
T  24794985 ttagctcatttggtaagggataatgcacaatatgtgcaggggttgggattcgaaccccggacatcccacttattcatatttaagatgaatttctctagcc 24794886  T
Q  224 actag 228  Q
    |||||    
T  24794885 actag 24794881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 15717115 - 15717061
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggc 166  Q
    ||||||||||  |||| |||||||| || |||| |||||||||||||||||||||    
T  15717115 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggc 15717061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 21874306 - 21874228
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaag 207  Q
    |||||||| || |||| |||||||||||||||| |||| ||||||| |||| |  |||||  ||||||| |||||||||    
T  21874306 tcatttggtaagggataatgcacaatatgtgcatgggcaggagttcgaatcccgaacacctcacttattcattttaaag 21874228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 32470689 - 32470786
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagaca-ccctacttatttattttaaaggtgaatttctcta 220  Q
    ||||||| ||||| |||| || ||||| ||||| |||||||||||  |||  || |||||||| ||||||||||| |  || ||||||||||||||||    
T  32470689 ttagttcctttggtaaagaataatgcataatatatgcaggggctgaggtttgaacctcagacacccctacttattcacctttaaggtgaatttctcta 32470786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 3974468 - 3974552
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    ||||| ||||||||||||||  || |||| ||  || ||| ||| ||||||| || || |||||||||||||||||| |||||||    
T  3974468 atgcagaatatgtgcaggggtcggggttcgaacttcggactccccacttattcatctttaaggtgaatttctctaactactaggc 3974552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 11552876 - 11552980
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| ||||||||||| |||| | | ||||| ||||||||||| || |||| || | ||| ||||| ||||||| || || ||||| ||||| |||| ||    
T  11552876 ttagctcatttggcaagggataacgtacaatgtgtgcaggggccggggttcgaaccccaggcaccccacttattcatctttaaggtaaatttttctagcc 11552975  T
Q  224 actag 228  Q
    |||||    
T  11552976 actag 11552980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 33528309 - 33528189
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  |||| |||||||| || |||| ||||||||| |||||||||||||| |||| || | ||||||||| ||||||| || || |||||    
T  33528309 ttgtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatctttaaggt 33528210  T
Q  210 gaatttctctaaccactaggc 230  Q
    ||||||||||| |||||||||    
T  33528209 gaatttctctagccactaggc 33528189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 47864641 - 47864747
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| |||||||||||||||||||| ||| |||| || | | ||||||| ||||||| || || |||||||||||||||| ||    
T  47864641 ttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 47864740  T
Q  224 actaggc 230  Q
    |||||||    
T  47864741 actaggc 47864747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 2259150 - 2259257
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||| ||||||||||||||||||||| |||||||||| | |||||| |||||||||| || || ||||| |    
T  2259150 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcaaaccccagaca-cctacttattcatctttaaggtaa 2259248  T
Q  212 atttctcta 220  Q
    |||| ||||    
T  2259249 atttatcta 2259257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 16141456 - 16141337
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||||||||   |||||||||||  || |||| ||||||||||||| || ||||||| |||| ||   ||||||||| ||||||| || ||||||||     
T  16141456 tgtccccatgagcatagttcatttgataagggataatgcacaatatgtacaagggctggggttcgaactccagacaccccacttattcatcttaaaggta 16141357  T
Q  211 aatttctctaaccactaggc 230  Q
    ||||| ||||||||||||||    
T  16141356 aatttatctaaccactaggc 16141337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 38668138 - 38668237
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||||| || |||| |||||||||| ||| ||||| ||||||| ||||| | ||||||| ||||||| || || |||||||||||||||| |||||||    
T  38668138 tcatttggtaagggataatgcacaatacgtgtaggggttggagttgaaatccctgacaccccacttattcatctttaaggtgaatttctctagccactag 38668237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 50381706 - 50381825
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||||||||  |||  |||||||| || |||| ||||||||||| ||||||||  || |||| |||| | ||||||| ||||||| || || ||||||    
T  50381706 tgtccccatgagcttaactcatttggtaagggataatgcacaatatatgcaggggtcggggttcgaatcccggacaccccacttattcatctttaaggtg 50381805  T
Q  211 aatttctctaaccactaggc 230  Q
    |||||||||| ||| |||||    
T  50381806 aatttctctagccattaggc 50381825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 985987 - 985905
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    ||||||||| |||||||||||||| ||   |||| | ||||||| ||||||| || ||||||||||||||||||| |||||||    
T  985987 atgcacaatttgtgcaggggctggggtctgaatcccggacaccccacttattcatcttaaaggtgaatttctctagccactag 985905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 39739270 - 39739383
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||  |||| |||||||| || |||| |||||||||||||||||||  ||| |||| || | | ||||||  ||||||| || || ||||||||||    
T  39739270 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaaccccggacacctcacttattcatctttaaggtgaatt 39739369  T
Q  215 tctctaaccactag 228  Q
    |||||| |||||||    
T  39739370 tctctagccactag 39739383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 46247253 - 46247363
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacacc---ctacttatttattttaaagg 208  Q
    ||||||||||  |||| |||||||| || |||| ||||||||| |||||||||||||| |||| || | ||||||||   || |||||| || || ||||    
T  46247253 gtccccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttcttattcatctttaagg 46247352  T
Q  209 tgaatttctct 219  Q
    |||||||||||    
T  46247353 tgaatttctct 46247363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 31435574 - 31435487
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||| |||||||||||||| ||||| ||| |||| || ||| |||| || ||||||| || || |||||||||||||||| |||||||    
T  31435574 ggataatgcacaatatgtgtaggggttggggttcgaacctcggacatcccacttattcatctttaaggtgaatttctctagccactag 31435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 33830453 - 33830358
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacca 224  Q
    |||||||| ||  ||| ||||||||||| ||||||||||  ||||  ||   ||||||||| ||||||| ||||| ||||||||||||||||||||    
T  33830453 tcatttggtaagagataatgcacaatatatgcaggggctctagtttgaactccagacaccccacttattcatttttaaggtgaatttctctaacca 33830358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 9321049 - 9320943
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||  || |||| ||| ||||| |||||||||| ||| |||| || | |  |||||| ||||||| || |||||| |||||||||||||||    
T  9321049 ttagctcatttgataagggataatgtacaatttgtgcaggggttggggttcgaaacccgaacaccccacttattcatcttaaagatgaatttctctaacc 9320950  T
Q  224 actaggc 230  Q
    |||||||    
T  9320949 actaggc 9320943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 44062109 - 44062028
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    ||||||||||||||||||||| ||||||| || | | ||||||| ||||||| || || ||||||||| |||||| |||||||    
T  44062109 atgcacaatatgtgcaggggccggagttcgaa-ccccgacaccccacttattcatctttaaggtgaatgtctctagccactag 44062028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 27817152 - 27817052
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||||| || |||| ||||||||| ||||||||||| ||||||| || | | ||||||| | ||||| || || ||| |||||||||||| |||||||    
T  27817152 tcatttggtaagggataatgcacaatttgtgcaggggccggagttcgaa-cccggacaccccatttattcatctttaagttgaatttctctagccactag 27817054  T
Q  229 gc 230  Q
    ||    
T  27817053 gc 27817052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 29645889 - 29645813
Alignment:
Q  152 aatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    ||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||||||||||||| |||||||    
T  29645889 aatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactag 29645813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 29226320 - 29226427
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 212  Q
    |||||||||  |||| |||||||| || |||| |  |||||||||||||||||| || |||| || | |  |||||| ||||||| || || ||||||||    
T  29226320 tccccatgagcttagctcatttggtaagggataacacacaatatgtgcaggggccggggttcgaaccccgtacaccccacttattcatctttaaggtgaa 29226419  T
Q  213 tttctcta 220  Q
    ||||||||    
T  29226420 tttctcta 29226427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 40415605 - 40415554
Alignment:
Q  171 gttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 222  Q
    ||||||||||||||||||  ||||||| | ||| ||||||||||||||||||    
T  40415605 gttcaaatctcagacacctcacttattcacttttaaggtgaatttctctaac 40415554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 22602293 - 22602187
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || | || |||||||||||||| |||||  |  |||| |||| |||||| |  ||||||| || || |||||||||||||||| ||    
T  22602293 ttagctcatttggtaaggaataatgcacaatatgtgtaggggacgaggttcgaatcccagacatcgcacttattcatctttaaggtgaatttctctagcc 22602194  T
Q  224 actaggc 230  Q
    |||||||    
T  22602193 actaggc 22602187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 36590383 - 36590437
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggc 166  Q
    |||||||||| ||||| |||||||| || |||| ||| |||||||||||||||||    
T  36590383 gtccccatgagattagctcatttggtaagggataatgtacaatatgtgcaggggc 36590437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 55426107 - 55426161
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggc 166  Q
    ||||||||||  |||| |||||||| ||||||| |||||||||||||||| ||||    
T  55426107 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgcatgggc 55426161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 34225187 - 34225243
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggct 167  Q
    |||| ||||||  |||| |||||||| || |||| ||||||||||||||||||||||    
T  34225187 tgtctccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggct 34225243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 48433812 - 48433694
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || ||||||| | | ||||||| ||||||| || || |||||||    
T  48433812 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcaaaccccggacaccccacttattcatctttaaggtga 48433713  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| |||||||||    
T  48433712 atttctctagccactaggc 48433694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 12166079 - 12166183
Alignment:
Q  116 ccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaattt 215  Q
    ||||||| |||| |||||||| || |||| ||||||||| |||||||||||||| |||| || | ||||||||| ||||||| || || |||||||||||    
T  12166079 ccatgaacttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatctttaaggtgaattt 12166178  T
Q  216 ctcta 220  Q
    |||||    
T  12166179 ctcta 12166183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 38378211 - 38378327
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||||||||  |||||| |||||| || |||| ||||||||||||||||||||| || |||  || | | ||||||| ||||||| ||||| ||||||    
T  38378211 tgtccccatgagtttagtttatttggtaagggataatgcacaatatgtgcaggggccggggtttgaaccccggacaccccacttattcatttttaaggtg 38378310  T
Q  211 aatttctctaaccacta 227  Q
    |||||||||| ||||||    
T  38378311 aatttctctacccacta 38378327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 40273813 - 40273922
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||    
T  40273813 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtg 40273912  T
Q  211 aatttctcta 220  Q
    ||||||||||    
T  40273913 aatttctcta 40273922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 23824695 - 23824577
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  |||| |||||||| || |||| |||||||||||||||| |||| |  |||| || | | ||||||||||||||| || || |||||    
T  23824695 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcatgggccgaggttcgaacc-cggacaccctacttattcatctttaaggt 23824597  T
Q  210 gaatttctctaaccactagg 229  Q
    ||||||||||| ||||||||    
T  23824596 gaatttctctagccactagg 23824577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 43440683 - 43440798
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 212  Q
    ||||| |||| |||||| |||||| || |||| ||||||||||||||||| ||  || |||| |||  ||||||||| ||||||| || || ||||||||    
T  43440683 tccccgtgaacttagtttatttggtaagggataatgcacaatatgtgcagaggtcggggttcgaattccagacaccccacttattcatctttaaggtgaa 43440782  T
Q  213 tttctctaaccactag 228  Q
    |||||||| |||||||    
T  43440783 tttctctagccactag 43440798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 3961493 - 3961392
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||||| ||||||| ||||||||| ||||||| ||| || |||| || | | |||| || ||||||| |||||||||||||||||||||| | |||||    
T  3961493 tcatttggtaaaggataatgcacaatttgtgcagaggccggggttcgaaccccggacatcccacttattcattttaaaggtgaatttctctagctactag 3961394  T
Q  229 gc 230  Q
    ||    
T  3961393 gc 3961392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 48619807 - 48619904
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccacta 227  Q
    |||||||| ||||||| ||| |||||||||||||||| ||| |||| ||  |||||||| | ||||||| || || |||||||||||||||| ||||||    
T  48619807 tcatttggtaaaggataatgtacaatatgtgcaggggttgg-gttcgaacttcagacactccacttattcatctttaaggtgaatttctctagccacta 48619904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 33248904 - 33248799
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||||||||||||||| ||||| ||  || |||| || | | ||||||||||||||| || || |||||||    
T  33248904 gtccccatgagcttagctcatttggtaagggatgatgcacaatatatgcagaggtcggggttcgaaccccggacaccctacttattcatctttaaggtga 33248805  T
Q  212 atttct 217  Q
    ||||||    
T  33248804 atttct 33248799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 24029978 - 24030086
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||  || |||| |||||||||||||| |||||| || |||| || | ||||||||| | ||||| || || |||||||    
T  24029978 gtccccatgagtttagctcatttgataagggataatgcacaatatgtgtaggggccggggttcgaaccccagacaccccatttattcatctttaaggtga 24030077  T
Q  212 atttctcta 220  Q
    |||||||||    
T  24030078 atttctcta 24030086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 27454007 - 27454123
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaa-ggtgaat 213  Q
    |||||||  |||| |||||||| || |||| ||||||||| ||||||||||  |  |||| || ||| ||||||| ||||||| || ||||| |||||||    
T  27454007 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgaggttcgaacctcggacaccccacttattcatcttaaaaggtgaat 27454106  T
Q  214 ttctctaaccactaggc 230  Q
    ||||||| |||||||||    
T  27454107 ttctctagccactaggc 27454123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 34322097 - 34322018
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 220  Q
    |||| ||||||||||||||||||| |||| |||  |||| ||||||||| | ||||| || ||||| |||||||||||||    
T  34322097 ggataatgcacaatatgtgcagggactggggtttgaatcccagacaccccatttattcatcttaaacgtgaatttctcta 34322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 4956174 - 4956076
Alignment:
Q  132 tttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    ||||| || |||| ||||||||||||||||||||  || |||| || |   ||||||| ||||||| || || |||||||||||||||| |||||||||    
T  4956174 tttggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccctggacaccccacttattcatctttaaggtgaatttctctagccactaggc 4956076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 41468841 - 41468934
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctc 218  Q
    ||||||||||||| || || | ||||||||| |||||| |||   ||||||||| |||| |||||||||||||| || ||||| |||||||||||    
T  41468841 ttagttcatttggtaaggggtaatgcacaatttgtgcaagggtcagagttcaaacctcaaacaccctacttattcatcttaaa-gtgaatttctc 41468934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 31793473 - 31793578
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||  || |||| ||||||||||||||||||||  || |||| || | | ||||||| ||||||| || || |||||| ||||||||| ||    
T  31793473 ttagctcatttgttaagggataatgcacaatatgtgcaggggtcggggttcgaaccccggacaccccacttattcatctttaaggtggatttctctagcc 31793572  T
Q  224 actagg 229  Q
    ||||||    
T  31793573 actagg 31793578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 26456107 - 26455991
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||  ||||||||||||||||||| |||  |||  || | ||||||| | | ||||| |  ||||||||||    
T  26456107 gtccccatgagcttagctcatttggtaagggacaatgcacaatatgtgcagggactgacgtttgaaccccagacactccagttattcaccttaaaggtga 26456008  T
Q  212 atttctctaaccactag 228  Q
    ||||||||| |||||||    
T  26456007 atttctctagccactag 26455991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 42554639 - 42554743
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| |||||||||||||||||||| ||| |||| || | | || |||| ||||||| || || | |||||||||| ||| ||    
T  42554639 ttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccggatacccgacttattcatctttatggtgaatttccctagcc 42554738  T
Q  224 actag 228  Q
    |||||    
T  42554739 actag 42554743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 28914908 - 28914861
Alignment:
Q  183 gacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    ||||||| ||||||| | |||||||||||||||||||| |||||||||    
T  28914908 gacaccccacttattcactttaaaggtgaatttctctagccactaggc 28914861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 3889831 - 3889785
Alignment:
Q  183 gacaccctacttatttattttaaaggtgaatttctctaaccactagg 229  Q
    ||||||| ||||||| || ||||||||||||||||||||||| ||||    
T  3889831 gacaccccacttattcatcttaaaggtgaatttctctaaccattagg 3889785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 37563282 - 37563237
Alignment:
Q  183 gacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    ||||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  37563282 gacaccctacttattcatttttaagatgaatttctctaaccgctag 37563237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 46266660 - 46266777
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||||||||  |||  |||||||| || |||| ||||||||| ||||| ||||  || |||| || ||   ||| || ||||||| || |||||||||    
T  46266660 tgtccccatgagcttaactcatttggtaagggataatgcacaatttgtgcgggggacggggttcgaaccttgaacatcccacttattcatcttaaaggtg 46266759  T
Q  211 aatttctctaaccactag 228  Q
    ||||| ||||||||||||    
T  46266760 aatttatctaaccactag 46266777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 24315443 - 24315340
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||| | || |||| |||||||||||||| |||||  || |||| || | || |||  | ||||||||||||||| |||||| ||||||||||    
T  24315443 ttagctcatttagtaatggataatgcacaatatgtgtaggggtcggggttcgaaccccatacattccacttatttattttaa-ggtgaacttctctaacc 24315345  T
Q  224 actag 228  Q
    |||||    
T  24315344 actag 24315340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 42841843 - 42841775
Alignment:
Q  152 aatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 220  Q
    |||||||||| || | || |||| || | ||||||||| ||||||| || |||||||||||||||||||    
T  42841843 aatatgtgcaaggaccggggttcgaaccccagacaccccacttattcatcttaaaggtgaatttctcta 42841775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 22341961 - 22341846
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||| |||  |||||||| ||| ||| |||||||||||||| ||||| ||| ||||||||| || |||||| |||| || || |||||||||||||    
T  22341961 cccatgaacttaaatcatttggtaaaagataatgcacaatatgtgtaggggttggggttcaaatcccaaacaccccacttgttcatcttaaaggtgaatt 22341862  T
Q  215 tctctaaccactaggc 230  Q
    ||||||||| ||||||    
T  22341861 tctctaaccgctaggc 22341846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 50815700 - 50815818
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||  ||||||| ||||||||| ||||||||||| || |||| || | | ||||||| || |||| || ||||||||||    
T  50815700 gtccccatgagcttagctcatttgataaaggataatgcacaatttgtgcaggggccggggttcgaaccccggacaccccacatattcatcttaaaggtga 50815799  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| |||||||||    
T  50815800 atttctctagccactaggc 50815818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 51974738 - 51974858
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  |||| |||||||| || |||| ||||||||||||||||||||  ||  ||| || ||| |||| || |||||||||| || |||||    
T  51974738 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcgggattcgaacctcggacatcccacttatttatctttaaggt 51974837  T
Q  210 gaatttctctaaccactaggc 230  Q
    |||||| |||| |||||||||    
T  51974838 gaatttatctagccactaggc 51974858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 11491309 - 11491203
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| ||||||| ||| |||| ||||| ||| ||||||||||| ||||||| || | | ||||||| ||||||| || || |||||||||||||||| ||    
T  11491309 ttagctcatttgacaagggataatgcataatttgtgcaggggccggagttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 11491210  T
Q  224 actaggc 230  Q
    |||||||    
T  11491209 actaggc 11491203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 40407062 - 40406944
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcagggg-ctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    |||||||||  |||| |||||||| || |||| |||||||||||||||||||| | || |||| || | | ||||||| ||||||| || || |||||||    
T  40407062 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccgggggttcgaaccccggacaccccacttattcatctttaaggtga 40406963  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| |||||||||    
T  40406962 atttctctagccactaggc 40406944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 2832175 - 2832056
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  |||| |||| ||| || || ||||||||||||||||||||||  || |||| || | || |||||| ||||||| || || |||||    
T  2832175 ttgtccccatgagcttagctcatctggtaaggggtgatgcacaatatgtgcaggggtcggggttcgaaccccaaacaccccacttattcatctttaaggt 2832076  T
Q  210 gaatttctctaaccactagg 229  Q
    ||||| ||||| ||||||||    
T  2832075 gaattcctctagccactagg 2832056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 16556447 - 16556562
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||  |||| |||||||| || |||| ||||||||||||||||||||  || |||| || | |  |||||| ||||||| || || ||||||||||    
T  16556447 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccccgaacaccccacttattcatctttaaggtgaatt 16556546  T
Q  215 tctctaaccactaggc 230  Q
    |||||| |||||||||    
T  16556547 tctctagccactaggc 16556562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 35909119 - 35909015
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggag-ttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaac 222  Q
    |||| |||||| | || |||| ||||||||||| ||||||||  |||| ||| |||| ||||||||| |||||||||| || ||||||||||| || |||    
T  35909119 ttagctcattttgtaagggataatgcacaatatatgcaggggtcggaggttcgaatcccagacaccccacttatttatctttaaggtgaatttttccaac 35909020  T
Q  223 cacta 227  Q
    |||||    
T  35909019 cacta 35909015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 46283115 - 46283223
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||  |||||||| || |||| ||||||||||||||||| ||| || |||| || | | ||||||| ||||||| || || |||||||    
T  46283115 gtccccatgagcttacctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccggacaccccacttattcatctttaaggtga 46283214  T
Q  212 atttctcta 220  Q
    |||||||||    
T  46283215 atttctcta 46283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 53096592 - 53096518
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttat-tttaaaggtgaatttctct 219  Q
    ||||||||||||||||||| || | |||| || ||||||||||| ||||||| ||  ||||||||||||||||||    
T  53096592 atgcacaatatgtgcagggactagtgttcgaacctcagacaccccacttattcatccttaaaggtgaatttctct 53096518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 23448966 - 23449059
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaa 205  Q
    ||||||||||| |||| | |||||| || |||| |||||||||||||||||||| ||| |||| || | |  |||||| ||||||| |||||||    
T  23448966 gtccccatgaacttagcttatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccgaacaccccacttattcattttaa 23449059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 25234931 - 25234844
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||| |||||||||| ||| ||||| ||  |||| || | ||||||||| | ||||| || || ||||||||||||||||||||||||    
T  25234931 ggataatgcacaataagtgtaggggttgaggttcgaaccccagacaccccagttattcatctttaaggtgaatttctctaaccactag 25234844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 36993037 - 36993152
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||  |||| |||||||  || |||| |||||||||||||| ||||| ||| |||  || | | ||||||| | ||||| || || ||||||||||    
T  36993037 cccatgagcttagctcatttgataagggataatgcacaatatgtgaaggggttggggtttgaaccccggacaccccaattattcatctttaaggtgaatt 36993136  T
Q  215 tctctaaccactaggc 230  Q
    |||||| |||||||||    
T  36993137 tctctagccactaggc 36993152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 27862934 - 27862848
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatt 197  Q
    |||||||||||  |||| |||||||  || |||| ||||||||| |||||||||||||| |||| || | | ||||||| |||||||    
T  27862934 tgtccccatgagcttagctcatttgataagggataatgcacaatttgtgcaggggctggggttcgaaccccggacaccccacttatt 27862848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 49607931 - 49607985
Alignment:
Q  174 caaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||| ||||||||| |||||||||  || |||||||||||||||| |||||||    
T  49607931 caaatcccagacaccccacttatttacctttaaggtgaatttctctagccactag 49607985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 45355790 - 45355702
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||| |||||||||||||| |||||  || |||| || | | ||||||| ||||||| || || |||||||||||||||| |||||||||    
T  45355790 ggataatgcacaatatgtgtaggggtcggggttcgaaccccggacaccc-acttattcatctttaaggtgaatttctctagccactaggc 45355702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 45369531 - 45369443
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||| |||||||||||||| |||||  || |||| || | | ||||||| ||||||| || || |||||||||||||||| |||||||||    
T  45369531 ggataatgcacaatatgtgtaggggtcggggttcgaaccccggacaccc-acttattcatctttaaggtgaatttctctagccactaggc 45369443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 31250141 - 31250258
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 212  Q
    |||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || ||||||||    
T  31250141 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaa 31250240  T
Q  213 tttctctaaccactaggc 230  Q
    |||||||| |||||||||    
T  31250241 tttctctagccactaggc 31250258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 38503361 - 38503251
Alignment:
Q  110 ttgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggt 209  Q
    ||||||||||||  |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||    
T  38503361 ttgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggt 38503262  T
Q  210 gaatttctcta 220  Q
    |||||||||||    
T  38503261 gaatttctcta 38503251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 43227871 - 43227974
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| ||||||||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||||||||||||| ||    
T  43227871 ttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagcc 43227970  T
Q  224 acta 227  Q
    ||||    
T  43227971 acta 43227974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 931006 - 930932
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 220  Q
    |||||||||||||||||||| ||| |||| || |||||||| || ||||||| || |||||||||||||||||||    
T  931006 atgcacaatatgtgcaggggttggggttcgaacctcagacatcccacttattcatcttaaaggtgaatttctcta 930932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 1572112 - 1572219
Alignment:
Q  121 aaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 220  Q
    ||||||| |||||||  || |||| ||||||| | |||||||||||||| |||| || | | ||| ||| ||||||| || |||||||||||||||||||    
T  1572112 aaattagctcatttgttaagggattatgcacattttgtgcaggggctggggttcgaaccccggactccccacttattcatcttaaaggtgaatttctcta 1572211  T
Q  221 accactag 228  Q
     |||||||    
T  1572212 gccactag 1572219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 4395953 - 4395835
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||  |||||||||||| ||| ||||| ||| ||||||||||| ||||||| || | | ||||||| | ||||| || || |||||||    
T  4395953 gtccccatgagcttaactcatttggcaaatgataatgcataatgtgtgcaggggccggagttcgaacccctgacaccccatttattcatctttaaggtga 4395854  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| ||| |||||    
T  4395853 atttctctagccaataggc 4395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 3867852 - 3867741
Alignment:
Q  115 cccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatt 214  Q
    |||||||| |||| | |||| | |||||||  |||| ||||| ||||||||  || |||| ||||||| |||||| |||||||||||||||| |||||||    
T  3867852 cccatgaacttagcttatttagtaaaggatattgcaaaatatatgcaggggtcggggttcgaatctcaaacaccccacttatttattttaaa-gtgaatt 3867754  T
Q  215 tctctaaccacta 227  Q
    ||||  |||||||    
T  3867753 tctccgaccacta 3867741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 15470724 - 15470608
Alignment:
Q  111 tgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtg 210  Q
    |||||| ||||  ||| ||||||||| || |||| |||||||||||||||| ||||||   ||| || | ||||||||| | ||||| || || ||||||    
T  15470724 tgtccctatgagcttaattcatttggtaagggataatgcacaatatgtgcaagggctgagattcgaaccccagacaccccatttattcatctttaaggtg 15470625  T
Q  211 aatttctctaaccacta 227  Q
    |||||||||| ||||||    
T  15470624 aatttctctagccacta 15470608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 17077366 - 17077472
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| ||||||||| ||||||||||  ||  ||| || | | ||||||| ||||||| || |||||||||||||| |||| ||    
T  17077366 ttagctcatttggtaagggataatgcacaatttgtgcaggggtcgggattcgaaccccggacaccccacttattcatcttaaaggtgaatttatctagcc 17077465  T
Q  224 actaggc 230  Q
    |||||||    
T  17077466 actaggc 17077472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 33545459 - 33545371
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||| ||||||||||||||||||||  ||||||  || ||| |||||||  |||||| || || |||||||||||||||| |||||||||    
T  33545459 ggataatgcacaatatgtgcaggggtcggagtttgaacctcggacacccc-cttattcatctttaaggtgaatttctctagccactaggc 33545371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 26671605 - 26671692
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaa-ggtgaatttctctaaccactag 228  Q
    |||| ||||||||| |||||||||||||   ||| |||| ||||||||| ||||||| || ||||| |||||||||||||| |||||||    
T  26671605 ggataatgcacaatttgtgcaggggctgagtttcgaatc-cagacaccccacttattcatcttaaaaggtgaatttctctagccactag 26671692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 26943202 - 26943289
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaa-ggtgaatttctctaaccactag 228  Q
    |||| ||||||||| |||||||||||||   ||| |||| ||||||||| ||||||| || ||||| |||||||||||||| |||||||    
T  26943202 ggataatgcacaatttgtgcaggggctgagtttcgaatc-cagacaccccacttattcatcttaaaaggtgaatttctctagccactag 26943289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 12375514 - 12375460
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggc 166  Q
    ||||||||||  |||| |||||||| || |||| |||||||||||||||||||||    
T  12375514 gtccccatgagcttagctcatttggtaatggataatgcacaatatgtgcaggggc 12375460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 5039700 - 5039789
Alignment:
Q  139 aaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||||| ||| |||||||||||| |||| || |||| ||  || ||||||| ||||||| || || ||||| |||||||||| |||||||    
T  5039700 aaggataatgtacaatatgtgcaagggccggggttcgaacttcggacaccccacttattcatctttaaggtaaatttctctagccactag 5039789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 419705 - 419823
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  |||| |||||||| || |||| ||| ||||||||||||||||| || |||| || | | ||||||| ||||||| || || |||||||    
T  419705 gtccccatgagcttagctcatttggtaagggataatgaacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtga 419804  T
Q  212 atttctctaaccactaggc 230  Q
    ||||||||| |||||||||    
T  419805 atttctctagccactaggc 419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 33482743 - 33482632
Alignment:
Q  113 tccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaa 212  Q
    |||||||||| |||| |||||||| || | |||||||||||||| ||||||| | |  |||| || ||||||||||| ||||||| || || ||| ||||    
T  33482743 tccccatgaacttagctcatttggtaaggaatgatgcacaatatatgcagggaccgtggttcgaacctcagacaccccacttattcatctttaagatgaa 33482644  T
Q  213 tttctctaacca 224  Q
    ||||||||||||    
T  33482643 tttctctaacca 33482632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 17543173 - 17543074
Alignment:
Q  131 atttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||||| || |||| ||||||||||||||||||||| ||||||| ||   | ||||||| ||||||| || || || |||| ||||||||||||||||||    
T  17543173 atttggtaagggataatgcacaatatgtgcaggggccggagttcgaacgccggacaccccacttattcatctttaatgtgactttctctaaccactaggc 17543074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 3330274 - 3330188
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccacta 227  Q
    |||| ||||||||||||||||| ||  ||||||| || | | ||||||| ||||||| || || |||||||||||||||||||||||    
T  3330274 ggataatgcacaatatgtgcagaggtcggagttcgaaccccggacaccccacttattcatctttaaggtgaatttctctaaccacta 3330188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 34107500 - 34107605
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaacc 223  Q
    |||| |||||||| || |||| ||||||||||||||||||||   | ||||||| | | ||||||| ||||||| || || |||||||||||||||| ||    
T  34107500 ttagctcatttggtaagggataatgcacaatatgtgcaggggtcagggttcaaacc-cggacaccccacttattcatctttaaggtgaatttctctagcc 34107598  T
Q  224 actaggc 230  Q
    |||||||    
T  34107599 actaggc 34107605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 6866518 - 6866606
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttct 217  Q
    |||||||| || |||| ||||||||||||||||||  | ||||||| |||| | ||||||  |||||||||| || |||||||||||||    
T  6866518 tcatttggtaagggataatgcacaatatgtgcaggaaccggagttcgaatcccggacacctcacttatttatctttaaggtgaatttct 6866606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 25553247 - 25553133
Alignment:
Q  112 gtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtga 211  Q
    ||||||||||  ||| ||||||||| || |||| ||||||||||||||||| |  ||| |||| || |||||| || | ||||||| || || ||| |||    
T  25553247 gtccccatgagcttaattcatttggtaagggataatgcacaatatgtgcagagattggggttcgaa-ctcagatactccacttattcatctttaagatga 25553149  T
Q  212 atttctctaaccacta 227  Q
    ||||||||||||||||    
T  25553148 atttctctaaccacta 25553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 33065347 - 33065241
Alignment:
Q  124 ttagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcaga-caccctacttatttattttaaaggtgaatttctctaac 222  Q
    |||| ||||||||||| |||| ||||||||| |||| |||||  || |||| || ||| || ||||||||||||| || || |||||||||||||||| |    
T  33065347 ttagctcatttggcaagggataatgcacaatgtgtgtaggggtcggggttcgaa-ctccgaacaccctacttattcatctttaaggtgaatttctctagc 33065249  T
Q  223 cactaggc 230  Q
    ||||||||    
T  33065248 cactaggc 33065241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 17376484 - 17376438
Alignment:
Q  184 acaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  17376484 acaccctatttatttatttttaaggtgaatttctctaaccgctaggc 17376438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 5901904 - 5901815
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    |||| ||||||||| | ||||||||| || || |||| | | ||||||| ||||||| || |||||||||||||||| || |||||||||    
T  5901904 ggataatgcacaatttctgcaggggccggggtacaaaccccggacaccccacttattcatcttaaaggtgaatttctttagccactaggc 5901815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 31149186 - 31149090
Alignment:
Q  129 tcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccact 226  Q
    |||||||| || |||| |||||||||||||||||||  ||  |||| || | ||||||||| |||| || || || ||||||||||||||||||||||    
T  31149186 tcatttggtaagggataatgcacaatatgtgcagggt-tgaggttcgaaccccagacaccccactttttaatctttaaggtgaatttctctaaccact 31149090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 41749937 - 41750057
Alignment:
Q  109 attgtccccatgaaattagttcatttggcaaaggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaagg 208  Q
    |||||||||||||  | || ||||||||||| |||| ||||||||| |||| |||||  || |||  || | | ||||||| ||||||| || || ||||    
T  41749937 attgtccccatgagctaagctcatttggcaagggataatgcacaatgtgtgtaggggtcggggtttgaaccccggacaccc-acttattcatctttaagg 41750035  T
Q  209 tgaatttctctaaccactaggc 230  Q
    |||||||||||| |||||||||    
T  41750036 tgaatttctctagccactaggc 41750057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 18424220 - 18424136
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactaggc 230  Q
    ||||||||||||||||||||| || |||| ||   | |||| || ||||||| || || |||||||||||||||| |||||||||    
T  18424220 atgcacaatatgtgcaggggccggggttcgaactccggacatcccacttattcatctttaaggtgaatttctctagccactaggc 18424136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 42678397 - 42678310
Alignment:
Q  141 ggatgatgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctctaaccactag 228  Q
    |||| |||||||||||| | ||||   ||||||| || | | ||||||| ||||||| || || ||||||||||||||||||||||||    
T  42678397 ggataatgcacaatatgcgtagggatcggagttcgaaccccggacaccccacttattcatctttaaggtgaatttctctaaccactag 42678310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 10185414 - 10185459
Alignment:
Q  170 agttcaaatctcagacaccctacttatttattttaaaggtgaattt 215  Q
    ||||||||| || ||||||| |||||||||||||||| ||||||||    
T  10185414 agttcaaatttcggacaccccacttatttattttaaaagtgaattt 10185459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 17801 - 17727
Alignment:
Q  146 atgcacaatatgtgcaggggctggagttcaaatctcagacaccctacttatttattttaaaggtgaatttctcta 220  Q
    ||||| ||||| |||||||  |||||||| || ||||||||||  ||||||| ||||| ||||||||||||||||    
T  17801 atgcataatatatgcagggattggagttcgaacctcagacacctcacttattcatttttaaggtgaatttctcta 17727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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