View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14800_low_13 (Length: 257)
Name: NF14800_low_13
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 6647701 - 6647941
Alignment:
| Q |
12 |
ataaacttgaagggacttgaccaaaatccaaagtttt----tgtttttattaataataataataccagattccttggtgaggctgaagagaacaaagaaa |
107 |
Q |
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| T |
6647701 |
ataaatttgaagggacttgaccaaaatccaaagtttttttctcttaataataataataataataccagattccttggtgaggctgaagagaacaaagaaa |
6647800 |
T |
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| Q |
108 |
gaccacaccagtaaaaggatgcttccgagtttcatgatgatattttctcaaa----------cctgaaaatattagaacaatgtcaaataagagggatag |
197 |
Q |
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| T |
6647801 |
gaccacaacagtaaaagaatgcttcctagtttcatgatgatattttctcaaacacgttcaatcctg-aaatattagaacaatgtcaaataagagggatag |
6647899 |
T |
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| Q |
198 |
actacacataaatatatacatcacgaaagtttagccaatact |
239 |
Q |
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| T |
6647900 |
actacacataaatatatacatcacgaaagtttagccgatact |
6647941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 4654503 - 4654401
Alignment:
| Q |
58 |
taataataataataccagattccttggtgaggctgaagagaacaaagaaagaccacaccagtaaaaggatgcttccgagtttcatgatgatattttctca |
157 |
Q |
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|||||||||||||||||||||| | ||||| | ||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||| |
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| T |
4654503 |
taataataataataccagattcataagtgagaccgaagagaacaaagaaagaccacaaccgtaaaaggattcttcctagtttcatgatgatattttctca |
4654404 |
T |
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| Q |
158 |
aac |
160 |
Q |
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| T |
4654403 |
aac |
4654401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 4648048 - 4647949
Alignment:
| Q |
58 |
taataataataataccagattccttggtgaggctgaagagaacaaagaaagaccacaccagtaaaaggatgcttccgagtttcatgatgatattttctca |
157 |
Q |
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|||||||||||||||||||||| | ||||| | |||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||| |
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| T |
4648048 |
taataataataataccagattcataagtgagaccaaagagaacaaagaaagaccacaacagtaagaggatgcttcctagcttcatgatgatattttctca |
4647949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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