View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14800_low_18 (Length: 217)
Name: NF14800_low_18
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 7279117 - 7278922
Alignment:
| Q |
3 |
atgaagaaaatgtgaagatgatgaagaaggagcaaaaggagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagt |
102 |
Q |
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| T |
7279117 |
atgaagaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagt |
7279018 |
T |
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| Q |
103 |
cttccattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcc |
198 |
Q |
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| T |
7279017 |
atttcattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcc |
7278922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 7374722 - 7374917
Alignment:
| Q |
3 |
atgaagaaaatgtgaagatgatgaagaaggagcaaaaggagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagt |
102 |
Q |
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| T |
7374722 |
atgaagaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagt |
7374821 |
T |
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| Q |
103 |
cttccattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcc |
198 |
Q |
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| T |
7374822 |
atttcattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcc |
7374917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 5848124 - 5848215
Alignment:
| Q |
6 |
aagaaaatgtgaagatgatgaagaaggagcaaaaggagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgtta |
98 |
Q |
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| T |
5848124 |
aagaaactgtgaagatgatgaa-aaggagcaaaaagagaggataaggatcactaaaaccatcatgaatttgcttcttaggttggattctgtta |
5848215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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