View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14800_low_2 (Length: 497)
Name: NF14800_low_2
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_low_2 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0442 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 2 - 483
Target Start/End: Complemental strand, 21005951 - 21005470
Alignment:
| Q |
2 |
tctctggttgatcaaccccaggatgtggaagcatcatactcttgagggtgtttttcttgttttgttgaacacatgcttagtagatttgaggctgcatgtt |
101 |
Q |
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| T |
21005951 |
tctctggttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgtt |
21005852 |
T |
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| Q |
102 |
tttattcacactactaggagttgaaaccatagcaatcatgacggtgttgttcttctcctgttgaacacttgcaggatagatttgaggcttaaagttttgg |
201 |
Q |
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| T |
21005851 |
ttgattcacactactaggagttgaaaccatagcaatcatgacggtgttattcttctcctgttgaacacttgcagggtagatttgaggcttaaagttttgg |
21005752 |
T |
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| Q |
202 |
ataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttgatcaacatgtattgaatagac |
301 |
Q |
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| T |
21005751 |
ataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttgatcaacatgtattgaatagac |
21005652 |
T |
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| Q |
302 |
ctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttagatttgaaggttttgtaatctcactattagtgt |
401 |
Q |
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| T |
21005651 |
ctttccgtcgatgtgggagtatttctaatgtcccttttcttagtggccaggggttatgagagttttagatttgaaggttttgtaatctcactattagtgt |
21005552 |
T |
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| Q |
402 |
ttctaactatacaacgcatggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctgtg |
483 |
Q |
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| T |
21005551 |
ttctaactatacaacgcatggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctgtg |
21005470 |
T |
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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 66861 - 66796
Alignment:
| Q |
418 |
catggggataacttcattgaaagaattcacgttaagtacgatgtattatttgttgtgttatctgtg |
483 |
Q |
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| T |
66861 |
catggggataacttcatcggaagaattcacattaaatacgatttataatttgttgtgttatctgtg |
66796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 5969 - 6009
Alignment:
| Q |
146 |
tgttgttcttctcctgttgaacacttgcaggatagatttga |
186 |
Q |
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| T |
5969 |
tgttgttcttctcctgttgaacacttgcatggtagatttga |
6009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
| Q |
146 |
tgttgttcttctcctgttgaacacttgcaggatagatttga |
186 |
Q |
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| T |
46936 |
tgttgttcttctcctgttgaacacttgcatggtagatttga |
46896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 9363 - 9403
Alignment:
| Q |
146 |
tgttgttcttctcctgttgaacacttgcaggatagatttga |
186 |
Q |
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| T |
9363 |
tgttgttcttctactgttgaacacttgcatggtagatttga |
9403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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