View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14800_low_3 (Length: 489)
Name: NF14800_low_3
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_low_3 |
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| [»] scaffold0182 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 89 - 474
Target Start/End: Original strand, 21708352 - 21708734
Alignment:
| Q |
89 |
ataaaattgcaacacacgttattatcttattcattttacttgctgtagaaatttgaatgtgagtagtctcaagtaactc-tcttctgacatagcaagcaa |
187 |
Q |
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| T |
21708352 |
ataaaattgcaacacatattattatcttattcattttacttgctatagaaacttgagtgtac--agtctagagtaacccctcttctgacatagcaagcca |
21708449 |
T |
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| Q |
188 |
gaaacacttacaaaatgcatgtcttgttaccaacaggaccgtctagagtataccgtttgcacccatcacaaacaactacatgctgaatacaagcaatttt |
287 |
Q |
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| T |
21708450 |
gaaacacttacaaa-tgcatgtcttgttaccaacaggtccgtccagagtataccgtttgcatctatcacacacaactacatgttgaatacaagcaatttt |
21708548 |
T |
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| Q |
288 |
cagactccatcagccaacaacttagggggtaannnnnnnggact-----aagccaaggctcatgttcccttgcggactgggtcccgtccaccccctccct |
382 |
Q |
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| T |
21708549 |
aagactccatcagccaacaactta-ggggtaattgttttggactaagccaagccaaggcccatatacccttgcggactgg-----gtccaccccctccct |
21708642 |
T |
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| Q |
383 |
tgcttaacacgttaacggaccataatatacaccttcctaaactctactgaatcaaagtcggtgaggccaatctaaatcgtctaaacttgatc |
474 |
Q |
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| T |
21708643 |
tgcttaacgcgtgaacgaaccataatgtacaccttcccaaactctactaaatcagagtcgggtaggccaatctagatcttccaaatttgatc |
21708734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 21708138 - 21708201
Alignment:
| Q |
34 |
aagggaattactattacgagtaatcata----attcataaaatatacaagactgatataataaaa |
94 |
Q |
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| T |
21708138 |
aagggaattactattacgagtaatcataactcattcataaaatatacaagact-atataataaaa |
21708201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 86; Significance: 7e-41; HSPs: 4)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 226 - 315
Target Start/End: Original strand, 14564 - 14653
Alignment:
| Q |
226 |
ccgtctagagtataccgtttgcacccatcacaaacaactacatgctgaatacaagcaattttcagactccatcagccaacaacttagggg |
315 |
Q |
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| T |
14564 |
ccgtctagagtataccgtttgcacccatcacaaacaactacatgttgaatacaagcaattttcagactccatcagccaacaacttagggg |
14653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 14478 - 14552
Alignment:
| Q |
85 |
tataataaaattgcaacacacgttattatcttattcattttacttgctgtagaaatttgaatgtgagtagtctca |
159 |
Q |
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| T |
14478 |
tataataaaattgcaacacatgttattatcttattcattttacttgctctagaaacttgagtgtaaatagtctca |
14552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 13057 - 13133
Alignment:
| Q |
21 |
tgttaccccggtcaagggaattactattacgag----taatcataattcataaaatatacaagactgatataataaa |
93 |
Q |
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| T |
13057 |
tgttaccccggttaagggaattactattacgagtaattaatcataattcataaaatatgcaacactaatataataaa |
13133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 475
Target Start/End: Original strand, 14736 - 14811
Alignment:
| Q |
401 |
accataatatacaccttcctaaactctactgaatcaaagtcggtgaggcc-aatctaaatcgtctaaacttgatcc |
475 |
Q |
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| T |
14736 |
accataatttacaccttcccatactctactgaatcagagtcgggtaggccaaatcttaatcgtccaaatttgatcc |
14811 |
T |
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