View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14800_low_4 (Length: 466)
Name: NF14800_low_4
Description: NF14800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14800_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 146 - 446
Target Start/End: Original strand, 27126165 - 27126465
Alignment:
| Q |
146 |
tatgttcaattaatttcattttctcaactttttaactggttttgttgtgttattgttgtgtccatttggatttgaagatttgcgatctgatgttttaatt |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27126165 |
tatgttcaattaatttcattttctcacctttttaactggtgttgttttgttattgttgtgtccgtttggatttgaagatttgcgatctgatgttttaatt |
27126264 |
T |
|
| Q |
246 |
tgactctgcttgtaggacattgctaactctgagctaccaccaactcacccaatcaggcttggtcttgctctgaacttctcagtgttttactatgagattc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27126265 |
tgactctgcttgtaggacattgctaactctgagctaccaccaactcacccaatcaggcttggtcttgctctgaacttctcagtgttttactatgagattc |
27126364 |
T |
|
| Q |
346 |
ttaactctcctgatcgtgcttgtggccttgcaaagcaggttagtgttctagatactgaataatgggagatcattttcatttggtttgttgtttctgtcaa |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |
|
|
| T |
27126365 |
ttaactctcctgatcgtgcttgtggccttgcaaagcaggttagtgttctagatactgaataatgggagatgattttcatttggtttgttgttcctttcaa |
27126464 |
T |
|
| Q |
446 |
t |
446 |
Q |
| |
|
| |
|
|
| T |
27126465 |
t |
27126465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 27125963 - 27126064
Alignment:
| Q |
4 |
tttttggtttaaaatgaaagtcttgtatgatggaacgtgtgctagtttattttacttgtttagaatatttgattatgagatgcatagtttgtgttcttgt |
103 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||||| |
|
|
| T |
27125963 |
tttttggtttaaactgaaagtcttgtatgatggaacgtgtgctagtttattttacttgtttagaatagttgattatgagatgtatatttagtgttcttgt |
27126062 |
T |
|
| Q |
104 |
tt |
105 |
Q |
| |
|
|| |
|
|
| T |
27126063 |
tt |
27126064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 45554709 - 45554791
Alignment:
| Q |
282 |
ccaccaactcacccaatcaggcttggtcttgctctgaacttctcagtgttttactatgagattcttaactctcctgatcgtgc |
364 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45554709 |
ccaccaactcatccaattaggctgggtcttgctctgaatttctctgtgttttactacgagattcttaactctcctgatcgtgc |
45554791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University