View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14801_high_1 (Length: 549)
Name: NF14801_high_1
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14801_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 63 - 534
Target Start/End: Complemental strand, 40123702 - 40123230
Alignment:
| Q |
63 |
ctttaatctatttttcttcactttaatcagcccttgatattattttgagaaatttgaagtgtttatgcatgcttatttcgggtaaaaagccaagcaccaa |
162 |
Q |
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| T |
40123702 |
ctttaatctatttttcttcactttaatcagcccttgatattattttgagaaatttgaagtgtttatgcatgcttatttcgggtaaaaagccaagcaccaa |
40123603 |
T |
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| Q |
163 |
tgaagatattactaaatatccgttcctaaagatgagacatagaaccaggtaattcaatagtgatttgaacaaccaccattcctaaatatggctgagtatc |
262 |
Q |
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| T |
40123602 |
tgaagatattactaaatatccgttcctaaagatgagacatagaaccaggtaattcaatagtgatttgaacaaccaccgttcctaaatatggctgagtatc |
40123503 |
T |
|
| Q |
263 |
caacaataattaactaccattcataggagaacggtagttaaccaccttgaagatattttcgaaagtttaaggtgtttgtaagcaattgttaggtgcataa |
362 |
Q |
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| T |
40123502 |
caacaataattaactaccattcataggagaacggtagttaaccacgttgaagatattttcgaaagtttaaggggtttgtaagcaattgttaggtgcataa |
40123403 |
T |
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| Q |
363 |
agagcaattttcataggtttttaaacctgtaatgaaatctatccatttgacnnnnnnnnnnnnngtggtatggagtatttaactttggtttatatatctt |
462 |
Q |
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| T |
40123402 |
agagcaattttcataggtttttaaacctgtaatgaaatttatccatttgacaaaaaacaaaaaagtggtatggagtatttaactttggtttatatatctt |
40123303 |
T |
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| Q |
463 |
gacaaaaataatctttggtttatatacctta-nnnnnnngagggatttatatacttgtttttggtcactagta |
534 |
Q |
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| T |
40123302 |
aacaaaaataatctttggtttatataccttattttttttgagggatttatatacttgtttttggtcactagta |
40123230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 4195586 - 4195660
Alignment:
| Q |
92 |
gcccttgatattattttgagaaatttgaagtgttta---tgcatgcttatttcgggtaaaaagccaagcaccaatga |
165 |
Q |
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|||||||||| |||||||||||||||||||||||| || |||||||||| |||| |||||||||||| ||||| |
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| T |
4195586 |
gcccttgata--attttgagaaatttgaagtgtttattctggatgcttattttcggtagaaagccaagcactaatga |
4195660 |
T |
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