View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14801_high_10 (Length: 239)
Name: NF14801_high_10
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14801_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 1584471 - 1584673
Alignment:
| Q |
18 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
117 |
Q |
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| T |
1584471 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
1584570 |
T |
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| Q |
118 |
tataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaattctaaagtggtaaataaattttgaaaatatttagatctcttaccaac |
217 |
Q |
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| T |
1584571 |
tataatatattcataaaatattaattaatgtg-atgcaacatcaatatgtaattctagagtgataaataaatttcgaaaatatttagatctcttaccaac |
1584669 |
T |
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| Q |
218 |
aagg |
221 |
Q |
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|||| |
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| T |
1584670 |
aagg |
1584673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 1593412 - 1593216
Alignment:
| Q |
18 |
atgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1593412 |
atgaagggtctattgaaggatcagctgcaccatttgtagtaaagtttctcaatctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacc |
1593313 |
T |
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| Q |
118 |
tataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaattctaaagtggtaaataaattttgaaaatatttagatctcttacca |
215 |
Q |
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||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
1593312 |
tataatatattcataaaatattaattaatgtg-atgcaacatcaatatgtaattctagagtgataaataaattttgaaaatatttagatctcttacca |
1593216 |
T |
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