View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14801_high_2 (Length: 488)
Name: NF14801_high_2
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14801_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 36408405 - 36408864
Alignment:
| Q |
11 |
gagcagcacagatacaagatcagaccgagtcgaagcttggcggtgaaagaagcactgaaatgtaaattgatattttcactctgtgcctttttaagtttgt |
110 |
Q |
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| T |
36408405 |
gagcagcacagatacaagatcagaccgagtcgaagcttggcggtgaaagaagcactgaaatgtaaattgatattttcacactgtgcctttttaagtttgt |
36408504 |
T |
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| Q |
111 |
ttaaagtataaggttgcaaatttctaagggaattctgtgaagtgattcattccagtatgttttctatacttcccgtgtttgtttaacttatatctgtttc |
210 |
Q |
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| T |
36408505 |
ttaaagtataaggttgcaaatttctaagggaattctgtgaagtgattcattccagtatgttttctatacttcctgtgtttgtttaacttatatctgtttc |
36408604 |
T |
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| Q |
211 |
tcattctatcagaagnnnnnnncttatctgtttttcaataatatcaatattatgatcacactaccattgtaatgaaatctgattccttcattcacaataa |
310 |
Q |
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| T |
36408605 |
tcattctatcagaagaaaaaaacttatctgtttttcaataatatcaatattatgatcacactaccattgtaatgaaatatgattccttcattcacaataa |
36408704 |
T |
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| Q |
311 |
gtttgacatgttcttacatagctaagttggtaatatactatgctacgtgtttaa-tttgagtggaaccnnnnnnnnattgggccatgatagtgaaattaa |
409 |
Q |
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| T |
36408705 |
gtttgacatgttcttacatagctaagttggtaatatactatgctacgtgtttaattttgagtggaaccttttttttattgggccatgatagtgaaattaa |
36408804 |
T |
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| Q |
410 |
aactttacaaacataaaagaaataaacaatactgtatggttgattttggaggaatcaatc |
469 |
Q |
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| T |
36408805 |
aactttacaaacataaaagaaataaacaatactgtatggttgattttggaggaatcaatc |
36408864 |
T |
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