View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14801_high_4 (Length: 374)
Name: NF14801_high_4
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14801_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 4184367 - 4184009
Alignment:
| Q |
1 |
tcaatgtgggtttgcccac-tattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtggaaccaatttaacaaaaaa |
99 |
Q |
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| T |
4184367 |
tcaatgtgggtttgcccacctattcctcaaattaaggaaaaagttcacaaacaaaccaattagtactagaaacagaaagtggaaccaatttaacaaaaaa |
4184268 |
T |
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| Q |
100 |
gctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgcttgtttgtgctggagaac |
199 |
Q |
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| T |
4184267 |
gctcagggtgacaattattagagaggggacatgatttctccttcatgattttgacgggttaattattggtctatcaacatgcttgtttgtgctggaaaac |
4184168 |
T |
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| Q |
200 |
attttatgactctcaacatgcttgtttgtgctagagaacattttttgacgtaaaagattggttaaacttttacggttcatgcaactcatcacactttggc |
299 |
Q |
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| T |
4184167 |
attttatgactatcaacatgcttgtttgtgctagagaacattttttgacgtaaaagattggttaaacttttacggttcatgcaactcatcacactttggc |
4184068 |
T |
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| Q |
300 |
accttccctcttcatgattnnnnnnnctgtagttgaaacgtgggttataaagtcatttt |
358 |
Q |
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| T |
4184067 |
accttccctcttcatgattaaaaaaactgtagttgaaacgtgggttataaagtcatttt |
4184009 |
T |
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