View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14801_high_5 (Length: 280)
Name: NF14801_high_5
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14801_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 41916006 - 41916256
Alignment:
| Q |
15 |
atgaagccaagcctgatgtaaaagaatatttaacccacaaaacggtgaaccttggccaactgtgaaccttccgttgtgaaccttccgtaaatatttgttg |
114 |
Q |
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| T |
41916006 |
atgaagccaagcctgatgtaaaagaatatttaacccacaaaacggtcaaccttggccaactgtgaaccttccgta---aatatttgttgaaaattga--g |
41916100 |
T |
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| Q |
115 |
aact----catgaactttatgctttacacgttagaaggaacatatcaacatgctatcgttaattcatat-ccatagattgtttcaagtggatttcctctt |
209 |
Q |
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| T |
41916101 |
aactaattcatgaactttatgctttacacgttagaaggaacatatcaacatgctatcgttaattcatatcccatagattgtttcaagtggatttcctctt |
41916200 |
T |
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| Q |
210 |
tctacataattatctaaactgaag-tttagcctccttaattttgaagggtaatagc |
264 |
Q |
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| T |
41916201 |
tatacgtaattatctaaactgaagcttttgcctccttaattttgaagggtaatagc |
41916256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 30910355 - 30910419
Alignment:
| Q |
196 |
gtggatttcctctttctacataattatctaaactgaagtttagcctccttaattttgaagggtaa |
260 |
Q |
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| T |
30910355 |
gtggatttcctctttctacataattttcaaagttgaagttttgcctctttaattttaaagggtaa |
30910419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 30910270 - 30910322
Alignment:
| Q |
129 |
atgctttacacgttagaaggaacatatcaacatgctatcgttaattcatatcc |
181 |
Q |
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| T |
30910270 |
atgcttcacacgttagaagaaacatatgaacatgcgatggttaattcatatcc |
30910322 |
T |
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