View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14801_low_12 (Length: 223)

Name: NF14801_low_12
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14801_low_12
NF14801_low_12
[»] chr5 (14 HSPs)
chr5 (18-207)||(30241581-30241770)
chr5 (18-206)||(30436530-30436718)
chr5 (18-199)||(30400791-30400972)
chr5 (18-166)||(29854028-29854176)
chr5 (18-169)||(30337763-30337914)
chr5 (18-169)||(30484118-30484269)
chr5 (18-169)||(30676526-30676677)
chr5 (18-157)||(30712678-30712817)
chr5 (18-167)||(30061089-30061238)
chr5 (18-169)||(30750363-30750514)
chr5 (18-206)||(30207239-30207427)
chr5 (18-169)||(29872891-29873042)
chr5 (110-165)||(30520867-30520922)
chr5 (110-165)||(30561207-30561262)
[»] chr7 (1 HSPs)
chr7 (18-169)||(26708049-26708200)
[»] chr4 (2 HSPs)
chr4 (18-169)||(20295820-20295971)
chr4 (28-204)||(52352686-52352862)
[»] chr3 (1 HSPs)
chr3 (18-206)||(25293148-25293336)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 30241770 - 30241581
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    |||||||||||||||| |||||||| ||||| |||||||||||  | | |||||| ||| |||||||||| |||||||||||| || |||||||||||||    
T  30241770 aaatggaactacctttggatccacatgacaacacagatttcaatgtgttccatttctctcgtgttaaccctgattccaattgttcattttgattccacac 30241671  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttctt 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241670 atcatccaaaactagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttctt 30241581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 30436530 - 30436718
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| || |||||||||||||    
T  30436530 aaatggaactaccttttgatccacacgacaaaacagatttcaaatgatcccatctatcttgtgttaacccaaattccaattgttcattttgattccacac 30436629  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttct 206  Q
    ||||||||||| ||||||||||||||| ||||| |||||| | ||||||||| | |   |||||| |||||||||| || || ||||||    
T  30436630 atcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaaatcaaagtcagcacacttct 30436718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 30400791 - 30400972
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||| || |||||||||||||    
T  30400791 aaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatctatcttgtgttaacccagattccaattgttcattttgattccacac 30400890  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatca 199  Q
    ||||||||||| ||||||||||||| | ||||| |||||||| ||||||||| | ||| |||||| | |||| ||| |||||    
T  30400891 atcatccaaaatcagcaaatatattctcccttgcaacaattcttgcacctttctttgtattacatctgaatccaaggcatca 30400972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 29854028 - 29854176
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||| |||||||||||  | |||||||||||||    
T  29854028 aaatggaactaccttttgatccacacgacaacacagacttcaaatgattccatttatcttgtgttaacccatattccaattgttgattttgattccacac 29854127  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcacc 166  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  29854128 atcatccaaaaccagcaaatatattttaccttgcaacaattcttgcacc 29854176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 30337914 - 30337763
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||| || |||||||||||||    
T  30337914 aaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatctatcttgtgttaacccagattccaattgttcattttgattccacac 30337815  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcaccttt 169  Q
    ||||||||||| ||||||||||||||| ||||| |||||| | |||||||||    
T  30337814 atcatccaaaatcagcaaatatattttcccttgcaacaatccttgcaccttt 30337763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 30484118 - 30484269
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||| || |||||||||||||    
T  30484118 aaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatctatcttgtgttaacccagattccaattgttcattttgattccacac 30484217  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcaccttt 169  Q
    ||||||||||| ||||||||||||||| | ||| |||||| | |||||||||    
T  30484218 atcatccaaaatcagcaaatatattttccgttgcaacaatccttgcaccttt 30484269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 30676677 - 30676526
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||| || |||||||||||||    
T  30676677 aaatggaactacctttagatccacacgacaaaacagatttcaaacgattccatctatcttgtgttaacccagattccaattgttcattttgattccacac 30676578  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcaccttt 169  Q
    |||||||||||||||||||||| |||| ||||| |||||| | |||||||||    
T  30676577 atcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcaccttt 30676526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 30712817 - 30712678
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||||||||||| || |||||||||||||    
T  30712817 aaatggaactaccttttgatccacacgacaaaacagattttaaacgatcccatctatcttgtgttaacccagattccaattgttcattttgattccacac 30712718  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaat 157  Q
    ||||||||||| ||||||||||||||| ||||| ||||||    
T  30712717 atcatccaaaatcagcaaatatattttcccttgcaacaat 30712678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 30061089 - 30061238
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    |||||||||||||||| |||||||| ||||| |||| |||||| || | |||||| ||| |||||||||| ||||||||||||  | |||||||||||||    
T  30061089 aaatggaactacctttggatccacaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgttgattttgattccacac 30061188  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcacct 167  Q
    |||||||||||||||||||||| |||| ||||| |||||| | |||||||    
T  30061189 atcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacct 30061238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 30750363 - 30750514
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    |||||||||||||||| |||||||| ||||| |||| |||||| || | |||||| ||| |||||||||| |||||||||||| || |||||||||| ||    
T  30750363 aaatggaactacctttggatccacaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgttcattttgattccatac 30750462  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcaccttt 169  Q
    |||||||||||||| ||||||| |||| ||||| |||||| | |||||||||    
T  30750463 atcatccaaaaccaacaaatatcttttcccttgcaacaatccttgcaccttt 30750514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 30207239 - 30207427
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    |||||||||||||||| ||||||||||| || || |||||||   ||| |||||| |||||  |||| ||  ||||||||||   | |||  ||||||||    
T  30207239 aaatggaactacctttggatccacacgataacactgatttcagtatattccatttctcttggcttaatccgaattccaattgctgatttttgttccacac 30207338  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttct 206  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||||||||| | ||| |||||| |||||  ||||| ||||||||||    
T  30207339 atcatccaaaatcagcaaatatattttaccttgcagcaattcctgcacctttctttgtattacatctaaattgaagccgtcatacttct 30207427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 29872891 - 29873042
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| || ||| ||||| |||||||  |||||||||||||||    |||  |||||||     
T  29872891 aaatggaactaccttttgatccacacgacaacacagacttcaaatgattccacttatcatgtgttagtccagattccaattgttgggttttgttccacag 29872990  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcaccttt 169  Q
    |||||||||||| ||||||||| |||||||||| | || ||| |||||||||    
T  29872991 atcatccaaaacgagcaaatattttttaccttgcagcacttcttgcaccttt 29873042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 30520922 - 30520867
Alignment:
Q  110 ttccacacatcatccaaaaccagcaaatatattttaccttgtaacaattcctgcac 165  Q
    |||||||||||||||||||| ||||||||| |||||||||  |||||||| |||||    
T  30520922 ttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcac 30520867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 30561262 - 30561207
Alignment:
Q  110 ttccacacatcatccaaaaccagcaaatatattttaccttgtaacaattcctgcac 165  Q
    |||||||||||||||||||| ||||||||| |||||||||  |||||||| |||||    
T  30561262 ttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcac 30561207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 26708049 - 26708200
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  || |||| ||||||||||||||||| ||||||||||| || |||||||||||||    
T  26708049 aaatggaactaccttttgatccacaggacaaaacagatttcaaacgattccatctatcttgtgttaacccatattccaattgttcattttgattccacac 26708148  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcaccttt 169  Q
    ||||||||||| ||||||||||||||| ||||| |||||| | |||||||||    
T  26708149 atcatccaaaatcagcaaatatattttcccttgcaacaatccttgcaccttt 26708200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 20295971 - 20295820
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  |  |||| ||||  ||||||||||||||||||||||  || |||||||||||||    
T  20295971 aaatggaactaccttttgatccacatgacaaaacagatttcaaacgagtccatatatcgggtgttaacccagattccaattgatcattttgattccacac 20295872  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcaccttt 169  Q
    |||||| |||| || |||||||||||| ||||| |||||| | |||||||||    
T  20295871 atcatctaaaatcaacaaatatattttcccttgcaacaatccttgcaccttt 20295820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 52352686 - 52352862
Alignment:
Q  28 accttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacacatcatccaaa 127  Q
    |||||| |||||||| ||||| ||||||||||| || | |||||| |||||  |||| ||   ||  |||| || | ||  |||||||||||||||||||    
T  52352686 acctttggatccacaggacaacacagatttcaacttgttccatttttcttggcttaatcctagtttgaattctagatttctattccacacatcatccaaa 52352785  T
Q  128 accagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatactt 204  Q
    |||| ||||||| |||||||||| |||||||| ||| |  || | ||| | |||| |||||| ||||||||| ||||    
T  52352786 accaacaaatatcttttaccttgcaacaattcttgcgctcttctttgtatcacatctaaatctaagccatcacactt 52352862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 25293336 - 25293148
Alignment:
Q  18 aaatggaactaccttttgatccacacgacaaaacagatttcaaattatcccatttatcttgtgttaacccagattccaattgtacactttgattccacac 117  Q
    ||||||||||||  || ||||||  |||||| |||||||||||  ||| | |||| ||||| ||||| |   ||||||||||   | |||  ||||||||    
T  25293336 aaatggaactacgattggatccaaccgacaatacagatttcaacatattcaatttttcttgggttaatctgaattccaattgctgatttttgttccacac 25293237  T
Q  118 atcatccaaaaccagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttct 206  Q
    ||| |||||||  |||||||||||||||||||| || | ||| | ||||||| | ||| |||||| |||||||||| ||||| ||||||    
T  25293236 atcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttctttgtattacatctaaatcaaaggcatcacacttct 25293148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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