View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14801_low_6 (Length: 275)
Name: NF14801_low_6
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14801_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 39750810 - 39750545
Alignment:
| Q |
10 |
catcatcatcagaagaagaccttgtgtttgtgctctgcttcttccatccgtacataatcataatcataatcataatctagggttccatttcaacttatct |
109 |
Q |
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| T |
39750810 |
catcatcatcagaagaagaccttgtgtttgtgctctgcttcttccatccgtacataatcataatcataatcataatctagggttccatttcaacttatct |
39750711 |
T |
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| Q |
110 |
ctctcatgacttcaatcatcatccttgtttgaggacatgagctccaccaatttgactggtttcctcttagcactcatttccagtgctttcattggctcca |
209 |
Q |
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| T |
39750710 |
ctctcatgacttcaatcatcatccttgtttgaggacatgagctccaccaatttgactggtttcctcttagcactcatttccagtgctttcattggctcca |
39750611 |
T |
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| Q |
210 |
gtttcatcatcaagaaaaagggtcttcaacttgccagagtcaacggcccttctgctagtaagtatc |
275 |
Q |
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| T |
39750610 |
gtttcatcatcaagaaaaagggtcttcaacttgccagagtcaacggcccttctgctagtaagtatc |
39750545 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 44564457 - 44564379
Alignment:
| Q |
194 |
gctttcattggctccagtttcatcatcaagaaaaagggtcttcaacttgccagagtcaacggcccttctgctagtaagt |
272 |
Q |
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| T |
44564457 |
gctttcatcggctccagcttcatcatcaagaaaaaaggtctccaacgtgccggtcttaacggcactcctgctagtaagt |
44564379 |
T |
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