View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14801_low_8 (Length: 253)
Name: NF14801_low_8
Description: NF14801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14801_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 11025055 - 11025304
Alignment:
| Q |
1 |
taccaacaaggaagtagattgtttccccaaaaagaagaaaggtaactctattcttcgttcaattcaataatat--gcaaaggattatatcttttttcgat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11025055 |
taccaacaaggaagtagattgtttccccaaaaagaagaaaggtaactctattcttcgttcaattcaataatatatgcaaaggattatatcttttttcgat |
11025154 |
T |
|
| Q |
99 |
agattaatctaatgatcaatagtattatatcttttttcgataaatgatatttaggtcgaaagattaatcctatgacgaagtttagttgagtaatgcaaag |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11025155 |
agattaatctaatgatcaatagtattatatcttttttcgataaatgatatttaggtcgaaagattaatcctatgacgaagtttagttgagtaatgcaaag |
11025254 |
T |
|
| Q |
199 |
gatttggaataattttaagaatagtccaaaatattattttcttcgacatc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11025255 |
gatttggaataattttaagaatagtccaaaatattattttcttctacatc |
11025304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 11040108 - 11040176
Alignment:
| Q |
4 |
caacaaggaagtagattgtttccccaaaaagaagaaaggtaactctattcttcgttcaattcaataata |
72 |
Q |
| |
|
||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11040108 |
caacaaggaagtagattgtgtcccaaaaaacaagaaaggtaactctattctttgttcaattcaataata |
11040176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University