View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14802_high_10 (Length: 313)
Name: NF14802_high_10
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 43 - 296
Target Start/End: Complemental strand, 17269916 - 17269663
Alignment:
| Q |
43 |
gtaactctatgcaaacacattcatggtctctctttcttctgctggcccccaatcgccgccttgcaccacccttctattttttgcatgtaattattctaat |
142 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17269916 |
gtaactctctgcaaacacattcacggtctctcttccttctgctggtccccaatcgccaccctgcaccacccttctattttttgcatgtaatttttctaat |
17269817 |
T |
|
| Q |
143 |
agtaataaacaaagaagacaaaagatctaggttttcagcttttggcatgccaacaaatcttgtctatttgaattagaagaaataggaaagagggcaaatg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17269816 |
agtaataaacaaagaagacaaaagatctaggttttcagcttttggcatgccaacaaatcttgtctatttgaattagaagaaataggaaagagggcaaatg |
17269717 |
T |
|
| Q |
243 |
gcaaatcataggattcctgtgaatttcatcaagatgtttcttgttggagtgttt |
296 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
17269716 |
gcaaatcattggattcccgtgaatttcatcaagatggatcttgttggagtgttt |
17269663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 26948381 - 26948511
Alignment:
| Q |
145 |
taataaacaaagaagacaaaagatctaggttttcagcttttggcatgccaacaaatcttgtctatttgaattagaagaaataggaaagagggcaaatggc |
244 |
Q |
| |
|
|||||||||| |||||||||| | | |||||||| | |||||| ||| ||||||||||| ||||||||||| |||||| ||||| ||||||| |
|
|
| T |
26948381 |
taataaacaatgaagacaaaataattgggttttcattgtcaggcatgtcaagaaatcttgtctcgttgaattagaaaaaatag----gagggtaaatggc |
26948476 |
T |
|
| Q |
245 |
aaatca-taggattcctgtgaatttcatcaagatg |
278 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||| |
|
|
| T |
26948477 |
aaatcattaggatgcatgtgaatttcatcaagatg |
26948511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 49756046 - 49755974
Alignment:
| Q |
114 |
ttctattttttgcatgtaattattctaatagtaataaacaaagaagacaaaagatctaggttttcagcttttgg |
187 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| | ||||| |||||||||| |
|
|
| T |
49756046 |
ttctattttttgc-tgtaatttttctaatagtaataaacaatatagacaaaagatttgggtttccagcttttgg |
49755974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 49755974 - 49755942
Alignment:
| Q |
218 |
gaagaaataggaaagagggcaaatggcaaatca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
49755974 |
gaagaaataggaaagagggcaaatggcaaatca |
49755942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University