View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_high_11 (Length: 290)
Name: NF14802_high_11
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 34650621 - 34650436
Alignment:
| Q |
30 |
aatattttgtaatagataatgacgaaaggaacaaaaatcaaaatgtttacatctaaaaatacctgttttnnnnnnnn-tacacggaaacaaaccaaaaac |
128 |
Q |
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| T |
34650621 |
aatattttgtaatagataatga----aggaacaaaaatcaaaatgtttacatctaaaaatacctgttttaaaaaaaaatagacggaaaaaagccaaaaac |
34650526 |
T |
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| Q |
129 |
tcgtcaacaacttacaaggtctaaatacatatttacattatatctacatttaggtgtatccaaatattgtgtctgaaatttgtgaccaaa |
218 |
Q |
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| T |
34650525 |
tcgtcaacaacttacaaggtctaaatacatatttacattatatctacatctatgtgtatccaaatattgtgtccgaaatttgtgaccaaa |
34650436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 34650471 - 34650435
Alignment:
| Q |
224 |
tgtatccaaatattgtgtccgaaatttgtgaccaaac |
260 |
Q |
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| T |
34650471 |
tgtatccaaatattgtgtccgaaatttgtgaccaaac |
34650435 |
T |
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