View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14802_high_12 (Length: 284)

Name: NF14802_high_12
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14802_high_12
NF14802_high_12
[»] chr1 (4 HSPs)
chr1 (6-277)||(10417940-10418214)
chr1 (15-267)||(10412226-10412478)
chr1 (6-96)||(10421857-10421947)
chr1 (54-100)||(10422395-10422441)
[»] chr2 (4 HSPs)
chr2 (6-127)||(30633112-30633233)
chr2 (6-127)||(30660841-30660962)
chr2 (6-127)||(30669521-30669642)
chr2 (6-80)||(30631054-30631128)
[»] chr5 (9 HSPs)
chr5 (6-133)||(35752630-35752757)
chr5 (6-188)||(35404339-35404521)
chr5 (6-141)||(35364665-35364800)
chr5 (10-246)||(35374111-35374342)
chr5 (13-126)||(35421488-35421601)
chr5 (13-126)||(35434833-35434946)
chr5 (9-246)||(35383893-35384122)
chr5 (54-100)||(35364218-35364264)
chr5 (73-126)||(35417009-35417062)
[»] chr7 (1 HSPs)
chr7 (6-249)||(29625363-29625607)
[»] chr8 (1 HSPs)
chr8 (15-123)||(13563187-13563295)
[»] chr3 (1 HSPs)
chr3 (9-124)||(1153036-1153151)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 10417940 - 10418214
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10417940 aatcccttgccaatcacagaaatgtagagactcattctatgatggcaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 10418039  T
Q  106 ttatcagtctctgaactcaaagcaagagtaacagtagctgatggcatgtaat---acatgaacatttggatagcaaagcagagaagtaatgtcataaaaa 202  Q
    ||||||||||||| |||||||||| ||| |||||| ||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||    
T  10418040 ttatcagtctctgtactcaaagcatgagcaacagtcgctgatggcatgtaataaaacacgaacatttggatagcaaagcagagaagtaatgtcataaaaa 10418139  T
Q  203 ttctcattttgctattaagaatatttaatatgagtaaccaaataatagttctagtgcatatgctgctttaatata 277  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| |||||||||||||    
T  10418140 ttctcattttgctattaagaatatttaatatgggtaaccaaataatagtttgagtgcatatactgctttaatata 10418214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 10412226 - 10412478
Alignment:
Q  15 ccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttatcagtc 114  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  10412226 ccattcacagaaatgtagagactcattccatgatggcaaagaatcttgtacaccatttgtaagcttttccttcaaagcaagcaaagcatgctcatcaatc 10412325  T
Q  115 tctgaactcaaagcaagagtaacagtagctgatggcatgtaatacatgaacatttggatagcaaagcagagaagtaatgtcataaaaattctcattttgc 214  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||| |||||||||||||||||||| |    
T  10412326 gctgaactcaaagcaagagtaacagtagctgatggcatgtaatgcatgaacatttggctggaaaagcagagaagtaacgtcataaaaattctcatttttc 10412425  T
Q  215 tattaagaatatttaatatgagtaaccaaataatagttctagtgcatatgctg 267  Q
    |||| ||||||| ||| ||| |||||||||  ||| |||||||||||||||||    
T  10412426 tatttagaatatgtaacatgggtaaccaaaagatacttctagtgcatatgctg 10412478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 10421857 - 10421947
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagc 96  Q
    |||||| | ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  10421857 aatcccctgccactcacagaaatatagagactcattccatgatggcaaagaatctggtacaccatttgtaagcgtttctttcaaagcaagc 10421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 10422395 - 10422441
Alignment:
Q  54 agaatctggtacaccatttgtaagcttttccttcaaagcaagcaaag 100  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  10422395 agaatcttgtacaccatttttaagcttttccttcaaagcaagcaaag 10422441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 30633233 - 30633112
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  ||    
T  30633233 aatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaagctagc 30633134  T
Q  106 ttatcagtctctgaactcaaag 127  Q
    |||||||||| |||| ||||||    
T  30633133 ttatcagtctttgaattcaaag 30633112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 30660962 - 30660841
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  ||    
T  30660962 aatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaagctagc 30660863  T
Q  106 ttatcagtctctgaactcaaag 127  Q
    |||||||||| |||| ||||||    
T  30660862 ttatcagtctttgaattcaaag 30660841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 30669642 - 30669521
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||    
T  30669642 aatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatatggtacaccatttgtaagcttttccttcaaagcaagcaaagccagc 30669543  T
Q  106 ttatcagtctctgaactcaaag 127  Q
    |||||||||| |||| ||||||    
T  30669542 ttatcagtctttgaattcaaag 30669521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 30631128 - 30631054
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagctt 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  30631128 aatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctggtacaccatttgtaagctt 30631054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 35752757 - 35752630
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    |||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  35752757 aatcccttgccacacacagaaatgtagagactcattccatgatggcaaagaatctggtacaccatttgtaagcttttcctttaaagcaagcaaagcaagc 35752658  T
Q  106 ttatcagtctctgaactcaaagcaagag 133  Q
    ||||||||||  |||||||||| |||||    
T  35752657 ttatcagtctgcgaactcaaagaaagag 35752630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 35404521 - 35404339
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||  ||    
T  35404521 aatcccttgccattcacaaaaatgtagagacttattccatgatggcaaagaatctggtacaccatttgtaagcttttccttcaatgcaagcaaagccagc 35404422  T
Q  106 ttatcagtctctgaactcaaagcaagagtaacagtagctgatggcatgtaatacatgaacatttggatagcaaagcagagaag 188  Q
    |||||||||| |||||||||||  || | ||| || |  | | ||||| |||||   ||||||||| ||||||||||||||||    
T  35404421 ttatcagtctttgaactcaaagagagcgcaactgttgtcggtagcatgaaatacgccaacatttggctagcaaagcagagaag 35404339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 35364800 - 35364665
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||| | |||||| |  |||||||||||||||||||| |||||||||||||||||| |     
T  35364800 aatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaagt 35364701  T
Q  106 ttatcagtctctgaactcaaagcaagagtaacagta 141  Q
    |||||||||| |||||||||||||| || |||||||    
T  35364700 ttatcagtctgtgaactcaaagcaaaagcaacagta 35364665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 35374342 - 35374111
Alignment:
Q  10 ccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttat 109  Q
    |||| ||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||         ||||||    
T  35374342 ccttgccattcacagaaatgtaaagactcattccatgatggaagagagtctggtacaccatttgtgagcttttccttcaaagcaa---------gcttat 35374252  T
Q  110 cagtctctgaactcaaagcaagagtaacagtagctgatggcatg---taatacatgaacatttggatagcaaagcagagaagtaatgtcataaaaattct 206  Q
    ||||||  |||||||||| ||||| | |||  | |||||| |||   |||||||  ||||||||| |||||||||||| ||| ||  |||||  | | ||    
T  35374251 cagtctgcgaactcaaagaaagagcagcagctgttgatggtatgaaataatacaccaacatttggctagcaaagcagaaaagaaacatcatactattcct 35374152  T
Q  207 cattttgct-attaagaatatttaatatgagtaaccaaata 246  Q
    |||||||||  || | |||||||| ||||||||||||||||    
T  35374151 cattttgctctttgaaaatatttattatgagtaaccaaata 35374111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 35421601 - 35421488
Alignment:
Q  13 tcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttatcag 112  Q
    ||||||||||||||||| ||||| |||||||||||||| | || ||| |||| |||||| ||||| ||||| ||||||| |||||||||||| |||||||    
T  35421601 tcccattcacagaaatgaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaaagcatgtttatcag 35421502  T
Q  113 tctctgaactcaaa 126  Q
    || |||||||||||    
T  35421501 tcactgaactcaaa 35421488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 35434946 - 35434833
Alignment:
Q  13 tcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttatcag 112  Q
    ||||||||||||||||  ||||| |||||||||||||| | || ||| |||| |||||| ||||| ||||| ||||||| |||||||||||| |||||||    
T  35434946 tcccattcacagaaataaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaaagcatgtttatcag 35434847  T
Q  113 tctctgaactcaaa 126  Q
    || |||||||||||    
T  35434846 tcactgaactcaaa 35434833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 35384122 - 35383893
Alignment:
Q  9 cccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgctta 108  Q
    |||| ||||||||||||||| ||   |||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||         |||||    
T  35384122 ccctccccattcacagaaatata---actcattccatgatggaagagaatctggtacgccatttgtgagcttttccttcaaagcaa---------gctta 35384035  T
Q  109 tcagtctctgaactcaaagcaagagtaacagtagctgatggcatg---taatacatgaacatttggatagcaaagcagagaagtaatgtcataaaaattc 205  Q
    |||||||  |||||||||| ||||| | |||  | |||||| |||   |||||||  ||||||||| |||||||||||| ||| ||  |||||  | | |    
T  35384034 tcagtctgcgaactcaaagaaagagcagcagctgttgatggtatgaaataatacaccaacatttggctagcaaagcagaaaagaaacatcatactattcc 35383935  T
Q  206 tcattttgct-attaagaatatttaatatgagtaaccaaata 246  Q
    ||||||||||  || | |||||||| ||||||||||||||||    
T  35383934 tcattttgctctttgaaaatatttattatgagtaaccaaata 35383893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 35364264 - 35364218
Alignment:
Q  54 agaatctggtacaccatttgtaagcttttccttcaaagcaagcaaag 100  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  35364264 agaatcttgtacaccatttttaagcttttccttcaaagcaagcaaag 35364218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 35417062 - 35417009
Alignment:
Q  73 gtaagcttttccttcaaagcaagcaaagcatgcttatcagtctctgaactcaaa 126  Q
    ||||||||||| || |||| |||||||||||| ||||||||| |||||||||||    
T  35417062 gtaagcttttcttttaaagaaagcaaagcatgtttatcagtcactgaactcaaa 35417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 29625363 - 29625607
Alignment:
Q  6 aatcccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgc 105  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| | |||||| |  || ||||| |||||||||||||||||||||||||||||  ||    
T  29625363 aatcccttgccattcacagaaatgtaaagactcattccatgatggcagagaatccgacaccccattcgtaagcttttccttcaaagcaagcaaagcgagc 29625462  T
Q  106 ttatcagtctctgaactcaaagcaagagtaacagtagctgatggcatgtaatacatgaacatttggatagcaaagcagagaagtaatgtcataaaaattc 205  Q
    |||||||| ||||||||| ||| || || ||  || ||| |||||  || |||||  ||||||||  | |||||||||||||| ||  |  |||||||||    
T  29625463 ttatcagtgtctgaactcgaagaaatagcaaatgttgctaatggccagtcatacaccaacatttgacttgcaaagcagagaagaaacattgtaaaaattc 29625562  T
Q  206 tcattttgcta-ttaagaatatttaatatgagtaaccaaataata 249  Q
    ||||||||||| |  ||||||| || |||| ||||| ||||||||    
T  29625563 tcattttgctagtggagaatatgtattatgggtaacaaaataata 29625607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 13563295 - 13563187
Alignment:
Q  15 ccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttatcagtc 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||| |||||||||||||||  ||||||| ||     
T  13563295 ccattcacagaaatgtagagactcattccatgatggtagagaatcgggcacgccatttgtaagcttttcctacaaagcaagcaaagctagcttatcggta 13563196  T
Q  115 tctgaactc 123  Q
    ||| |||||    
T  13563195 tctaaactc 13563187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 1153151 - 1153036
Alignment:
Q  9 cccttcccattcacagaaatgtagagactcattccatgatggtaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgctta 108  Q
    ||||| ||||| ||| ||||||||||||||||||||||| || | |||||| || || ||||||||||| |||| ||||||||||||||||||  ||||     
T  1153151 cccttgccatttacaaaaatgtagagactcattccatgacggcagagaatcaggcacgccatttgtaagttttttcttcaaagcaagcaaagctagcttg 1153052  T
Q  109 tcagtctctgaactca 124  Q
    || || ||||||||||    
T  1153051 tccgtgtctgaactca 1153036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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