View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14802_high_17 (Length: 244)
Name: NF14802_high_17
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14488347 - 14488107
Alignment:
| Q |
1 |
ttgaaaaaacgtgaatagcaaagggtataaaaaatcatagaaacaaagatgaagaacaaagggtttctagatttccataacctgagnnnnnnntcattgc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
14488347 |
ttgaaaaaacgtgaatatcaaagggtataaaaaatcatagaaacaaagatgaagaacaaaggttttctagatttccata-cctgagaaaaaaatcattgc |
14488249 |
T |
|
| Q |
101 |
aggcgatgttagatggtcaacaactattttatttgtggtgtgtgagactttcttgttttttattccattttaaagaaattaaattaacaatg-aaaagta |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
14488248 |
aggcgatgttagactgtcaacaactattttatttgtggtgtgtgagactttcttgttttttattctattttaaagaaattaaattaacaatgaaaaagta |
14488149 |
T |
|
| Q |
200 |
caaacaagggaagaatgagaattcgggactatcaatcctatg |
241 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
14488148 |
caaacaagggaagaaggagaattcgggaatgtcaatcctatg |
14488107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 573669 - 573563
Alignment:
| Q |
122 |
aactattttatttgtggtgtgtgagactttcttgttttttattccattttaaagaaattaaattaacaatgaaaagtacaaacaagggaagaatgagaat |
221 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
573669 |
aactattttatctgtggtatgtggaactttcttgttttttattttattttaaagaaattaaattaacaatgaaaagtacaaacaagggaagaagtagaat |
573570 |
T |
|
| Q |
222 |
tcgggac |
228 |
Q |
| |
|
| ||||| |
|
|
| T |
573569 |
ttgggac |
573563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 573830 - 573772
Alignment:
| Q |
25 |
gtataaaaaatcatagaaacaaagatgaagaacaaagggtttctagatttccataacct |
83 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
573830 |
gtatagaaaatcggagaaacaaagatgaagaacaaagggtttctagatttccataacct |
573772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 573728 - 573672
Alignment:
| Q |
27 |
ataaaaaatcatagaaacaaagatgaagaacaaagggtttctagatttccataacct |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
573728 |
ataaaaaatcatagaaacaaagatgaagaacaaagagttttcagatttccataacct |
573672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 49244828 - 49244747
Alignment:
| Q |
147 |
actttcttgttttttattccattttaaagaaattaaattaacaatgaaaagtacaaacaagggaagaatgagaattcgggac |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
49244828 |
actttcttgttttttattttattttaaagaaattaaattaacaatgaaaagtacaaacaagggaagaaatagaatttgggac |
49244747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 49244884 - 49244840
Alignment:
| Q |
39 |
agaaacaaagatgaagaacaaagggtttctagatttccataacct |
83 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49244884 |
agaaacaaagatgaagaacaaagggtttccagatttccataacct |
49244840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University