View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_high_9 (Length: 313)
Name: NF14802_high_9
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_high_9 |
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| [»] scaffold0564 (1 HSPs) |
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Alignment Details
Target: scaffold0564 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 10784 - 10485
Alignment:
| Q |
1 |
agcaacatgtcttttagcaggggagttcatgacatagttcctgaattgaagcatattaactgttagtct--gttacatcaagtttatgtagcagttagtt |
98 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |
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| T |
10784 |
agcaacatgtcttttagcaggggagttcatggcatagttcctgaattgaagcatattaactgttacattaagttt-atcaagtttatgtagcaattagtt |
10686 |
T |
|
| Q |
99 |
tgatattaacgtaagttaaaactcatgtccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaatagttaaacaacatagtgtgatga |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10685 |
tgatattaacgtaagttgaaactcatgtccttcaataaaagcttgtt----acaaggttctggaatgcaatgttaatagttaaacagcatagtgtgatga |
10590 |
T |
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| Q |
199 |
tgacatgtgcagagaagtcagtattgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatg |
298 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10589 |
tgacatgtgcagagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatg |
10490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 39489994 - 39489697
Alignment:
| Q |
1 |
agcaacatgtcttttagcaggggagttcatgacatagttcctgaattgaagcatattaactgttagtct--gttacatcaagtttatgtagcagttagtt |
98 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |
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| T |
39489994 |
agcaacatgtcttttagcaggggagttcatggcatagttcctgaattgaagcatattaactgttacattaagttt-atcaagtttatgtagcaattagtt |
39489896 |
T |
|
| Q |
99 |
tgatattaacgtaagttaaaactcatgtccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaatagttaaacaacatagtgtgatga |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
39489895 |
tgatattaacgtaagttgaaactcatgtccttcaataaaagcttgtt----acaaagttctggaatgcaatgt--atagttaaacagcatagtgtgatga |
39489802 |
T |
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| Q |
199 |
tgacatgtgcagagaagtcagtattgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatg |
298 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39489801 |
tgacatgtgcaaagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatg |
39489702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 12749043 - 12749340
Alignment:
| Q |
1 |
agcaacatgtcttttagcaggggagttcatgacatagttcctgaattgaagcatattaactgttagtct--gttacatcaagtttatgtagcagttagtt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |
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| T |
12749043 |
agcaacatgtcttttagcaggggagttcatggcatagttcctgaattgaagcatattaactgttacattaagttt-atcaagtttatgtagcaattagtt |
12749141 |
T |
|
| Q |
99 |
tgatattaacgtaagttaaaactcatgtccttcaataaaagcttgtttgttacaaagttctggaatgcaatgttaatagttaaacaacatagtgtgatga |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
12749142 |
tgatattaacgtaagttgaaactcatgtccttcaataaaagcttgtt----acaaagttctggaatgcaatgt--atagttaaacagcatagtgtgatga |
12749235 |
T |
|
| Q |
199 |
tgacatgtgcagagaagtcagtattgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatg |
298 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12749236 |
tgacatgtgcaaagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcctatg |
12749335 |
T |
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