View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_low_1 (Length: 543)
Name: NF14802_low_1
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 13 - 530
Target Start/End: Original strand, 909465 - 909982
Alignment:
| Q |
13 |
catcagttctttcgctcaaggaccaattttccatagccactgctggggtagtaaataggttggttaaatgtattacccttcaaaatataattgaagtctt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
909465 |
catctgttctttcgctcaaggaccaattttccatagccactgctggggtagtaaataggttggttaaatgtattacccttcaaaatataattgaagtctt |
909564 |
T |
|
| Q |
113 |
tttaagcttttagcggtgttgattgattttaccatttaattggtttattccagtgtgctgaagttttgggataccagaaatttaaaaagtattgtcacac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
909565 |
tttaagcttttagcggtgttgattgattttaccatttaattggtttattccagtgtgctgaagttttgggataccagaaatttaaaaagtattgtcacac |
909664 |
T |
|
| Q |
213 |
aagcatgtcctgaaccaggaaaggttacttggaatggaactgagatgtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
909665 |
aagcatgtcctgaaccaggaaaggttacttggaatggaactgagatgtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttaca |
909764 |
T |
|
| Q |
313 |
aattgaggttcctgaataaattgaactatgatttatatgtttaataagagggtatatgcatttcttatggaaatacatctcacataaagttaaactctga |
412 |
Q |
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| T |
909765 |
aattgaggttcctgaataaattgaactatgatttatatgtttaataagagggtatatgcatttcttatggaaatatatctcacataaagttaaactctga |
909864 |
T |
|
| Q |
413 |
atgtgatagaaaatgtttatgcttttttatacgactgatttttgcactttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcatta |
512 |
Q |
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| T |
909865 |
atgtgatagaaaatgtttatgcttttttatacgactgatttttgcactttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcatta |
909964 |
T |
|
| Q |
513 |
tcttgactgtattcttct |
530 |
Q |
| |
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| T |
909965 |
tcttgactgtattcttct |
909982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 528
Target Start/End: Complemental strand, 662489 - 661965
Alignment:
| Q |
13 |
catcagttctttcgctcaaggaccaattttccatagccactgctggggtagtaaataggttggttaaatgtattacccttcaaaatat---------aat |
103 |
Q |
| |
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|||| ||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
662489 |
catctgttctttggctcaaggatcaagtttccatagccactgctggggcagtaaataggttggttaa-tgtattacccttcaaaatattcaaaatataat |
662391 |
T |
|
| Q |
104 |
tgaagtcttttt-aagcttttagcggtgttgattgattttaccatttaattggtttattccagtgtgctgaagttttgggataccagaaatttaaaaagt |
202 |
Q |
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| T |
662390 |
tgaagttttttttaagcttttagcagtgttaattgattttaccatttaatttgtttattccagtgtggtgaagttttgggataccagaaatttaaaaagt |
662291 |
T |
|
| Q |
203 |
attgtcacacaagcatgtcctgaaccaggaaaggttacttggaatggaactgagatgtgcagtggtaggtttttagtttctatacaacgattctggctta |
302 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
662290 |
attgtcacacaagcatgtcctgaaccaggaaaggttagttggaatggaactgagatgtgcagtggtagttttttagtttctatacaacgagtctggctta |
662191 |
T |
|
| Q |
303 |
agagtttacaaattgaggttcctgaataaattgaactatgatttatatgtttaataagagggtatatgcatttcttatggaaatacatctcacataaagt |
402 |
Q |
| |
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|||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||| |
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|
| T |
662190 |
ggagtttgcaaattgagattcctgagtaaattgaactatgatttatatgtttacgaagagggtatatgaatttcttatggaaatatatctcacatgaagt |
662091 |
T |
|
| Q |
403 |
taaactctgaatgtgatagaaaatgtttatgcttttttatacgactgatttttgcactttgttgatttttagtagatattggaaagcttgaaatgatgta |
502 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
662090 |
taaactgtgaatgtgatagaaaatgtttatgcttttttatatgactgatttttgcactttgttgatttttagtagatattggaaagcttgaaatgatgta |
661991 |
T |
|
| Q |
503 |
atcttcattatcttgactgtattctt |
528 |
Q |
| |
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||||||| | |||||||||||||||| |
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| T |
661990 |
atcttcactgtcttgactgtattctt |
661965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 43996238 - 43996118
Alignment:
| Q |
205 |
tgtcacacaagcatgtcctgaaccaggaaaggttacttggaatggaactga---gatgtgcagtggtaggtttttagtttctatacaacgattctggctt |
301 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||| || || |||| ||| |
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| T |
43996238 |
tgtcacataagcatgtcctgaaccaggaaaggttagttgtaatggaactgagatgatgtgaagtggtagtcttatagtttctaaaccgtgagtctgactt |
43996139 |
T |
|
| Q |
302 |
aagagtttacaaattgaggtt |
322 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
43996138 |
aggagtttacaaattgaggtt |
43996118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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