View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_low_12 (Length: 294)
Name: NF14802_low_12
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 718617 - 718343
Alignment:
| Q |
1 |
tgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgcttgtgcaactaaattaact |
100 |
Q |
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| T |
718617 |
tgttcttgaaaagaataatgtccaactactaataaaaaatgtatgctttgattaattaaaatttactaggtctttacacgctagtgcaactaaattaact |
718518 |
T |
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| Q |
101 |
atggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcacccttacataaacatatacaagcaaattacacgaata |
200 |
Q |
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| T |
718517 |
atggacttgttcaatgtcacttgcttataaatagacattatgtttgcattgtgaaatatatcatccttacataaacatatacaagcaaattacacgaata |
718418 |
T |
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| Q |
201 |
aaatttctnnnnnnnnnncatgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtgccttt |
276 |
Q |
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| T |
718417 |
aaatttct-aaaaaaaaacatgaagactacttacttgtttgtgacagccttcttggccttagcatcatgtgccttt |
718343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 703092 - 703050
Alignment:
| Q |
234 |
cttgtttgtgacagccttcttggccttagcatcatgtgccttt |
276 |
Q |
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| T |
703092 |
cttgtttgtgacagccttcttagctttagcatcttgtgccttt |
703050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 712346 - 712388
Alignment:
| Q |
234 |
cttgtttgtgacagccttcttggccttagcatcatgtgccttt |
276 |
Q |
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| T |
712346 |
cttgtttgtgacagccttcttagctttagcatcttgtgccttt |
712388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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