View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14802_low_18 (Length: 250)
Name: NF14802_low_18
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 608606 - 608364
Alignment:
| Q |
5 |
tgtccaagaatataacaatgagcacaaataagaggaagtctctcatattttactccgatgtaaaaagcaaaacattatatttcctaccatgattttatta |
104 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
608606 |
tgtccaataatatgacaatgagcacaaataagaggaagtctctcatgttctactccgatgtaaaaagcaaaacattatatttcctaccatgattttatta |
608507 |
T |
|
| Q |
105 |
tgtgatattattgttaacaagaacccttacaaaaatgatcgaaaacacgatttctcgtgactatatatctaaagtaattggagtctcaatactgcaagaa |
204 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
608506 |
tttgatattattgttaacaagaacccttac-aaaatgatcgaaaacacaatccctcgtgac--tatatctaaagtaattggagtctcaatactacaagaa |
608410 |
T |
|
| Q |
205 |
tttttaaatagaagtctatgttcccaatattccaacgacaaattga |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
608409 |
attttaaatagaagtctatgttcccaatattccaacgacaaattga |
608364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University