View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14802_low_20 (Length: 238)

Name: NF14802_low_20
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14802_low_20
NF14802_low_20
[»] chr8 (7 HSPs)
chr8 (20-238)||(34435004-34435222)
chr8 (27-79)||(13990548-13990600)
chr8 (18-63)||(30085425-30085470)
chr8 (19-79)||(6580918-6580978)
chr8 (18-79)||(33440535-33440596)
chr8 (18-63)||(1311487-1311532)
chr8 (20-77)||(28700644-28700701)
[»] chr7 (8 HSPs)
chr7 (18-79)||(47822068-47822129)
chr7 (18-79)||(29310453-29310514)
chr7 (18-79)||(36738546-36738607)
chr7 (18-105)||(45508504-45508589)
chr7 (18-62)||(557425-557469)
chr7 (27-65)||(25695977-25696015)
chr7 (27-69)||(46947804-46947845)
chr7 (22-79)||(41873467-41873524)
[»] chr4 (6 HSPs)
chr4 (18-79)||(51475195-51475256)
chr4 (19-76)||(30111856-30111913)
chr4 (18-79)||(37306437-37306498)
chr4 (27-79)||(21776539-21776591)
chr4 (18-62)||(43480331-43480375)
chr4 (42-79)||(51475275-51475312)
[»] chr5 (3 HSPs)
chr5 (18-103)||(40699486-40699571)
chr5 (39-79)||(32153801-32153841)
chr5 (18-79)||(42958527-42958588)
[»] chr1 (7 HSPs)
chr1 (18-103)||(19079000-19079085)
chr1 (18-103)||(19126888-19126973)
chr1 (18-103)||(24733934-24734019)
chr1 (20-79)||(16173098-16173157)
chr1 (19-79)||(24886127-24886187)
chr1 (18-77)||(31602148-31602207)
chr1 (27-79)||(4578672-4578724)
[»] chr3 (9 HSPs)
chr3 (18-76)||(42780759-42780817)
chr3 (18-79)||(13639491-13639552)
chr3 (27-70)||(28215343-28215386)
chr3 (27-70)||(28215767-28215810)
chr3 (18-60)||(20909343-20909385)
chr3 (18-104)||(38602897-38602983)
chr3 (27-68)||(1719104-1719145)
chr3 (18-79)||(54186960-54187021)
chr3 (35-79)||(28215831-28215875)
[»] chr2 (4 HSPs)
chr2 (27-79)||(9132272-9132324)
chr2 (18-79)||(5140001-5140062)
chr2 (18-62)||(6951786-6951830)
chr2 (19-79)||(7709835-7709895)
[»] chr6 (1 HSPs)
chr6 (18-62)||(7447614-7447658)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 34435004 - 34435222
Alignment:
Q  20 atcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttagatagtcagtgttcttaccatttctcttgtatttactcagga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  34435004 atcccatataaagcggtgagatccacatgggtttcacccaataaaagagtgggtgttagaaagtcggtgttcttaccatttctcttgtatttactcagga 34435103  T
Q  120 cgttgtatcctatgaacaattttccttttacggtattcaaagattgaaaagtaattattatggtattgtctcatatttctctcaatcatcacaactcata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34435104 cgttgtatcctatgaacaattttccttttacggtattcaaagattgaaaagtaattattatggtattgtctcatatttctctcaatcatcacaactcata 34435203  T
Q  220 agtcctgactctgtatcag 238  Q
    |||||||||||||||||||    
T  34435204 agtcctgactctgtatcag 34435222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 13990548 - 13990600
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  13990548 ataaagtggtgagacccacatgagtttcacccaataagagagtgggtgttaga 13990600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 30085470 - 30085425
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataa 63  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  30085470 ggatcccacataaagtggtgagatccacatgagtttcacccaataa 30085425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 6580918 - 6580978
Alignment:
Q  19 gatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||| ||| ||| ||||||||    
T  6580918 gatcccacataaagtggtgagacccacatgagtttcacccaatagaagggtgagtgttaga 6580978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 33440596 - 33440535
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||||  |||||| ||||||||    
T  33440596 ggatcccacataaagtggtgagacccacatgagtttcacctaataggagagtgagtgttaga 33440535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 1311532 - 1311487
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataa 63  Q
    |||||||| ||||| |||||||| || |||||||||||||||||||    
T  1311532 ggatcccacataaaatggtgagacccgcatgggtttcacccaataa 1311487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 28700644 - 28700701
Alignment:
Q  20 atcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgtta 77  Q
    |||||| ||||||||||||||  |||||| ||||||| ||||| ||||||| ||||||    
T  28700644 atcccacataaagtggtgagactcacatgagtttcactcaatagaagagtgagtgtta 28700701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 47822068 - 47822129
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  47822068 ggatcccacataaagtggtgagatccacatgggtttcacccaatagaagagtgagtgttaga 47822129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 29310514 - 29310453
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||||| |||| ||||||||    
T  29310514 ggatcccacataaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttaga 29310453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 36738546 - 36738607
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||  |||||| ||||||||    
T  36738546 ggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgagtgttaga 36738607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 45508589 - 45508504
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttagatagtcagtgttcttaccatttctctt 105  Q
    ||||||||  ||||||||||||| |||| |||||||||||||||| |||| || |||||||| ||  ||||||| || ||||||||||    
T  45508589 ggatcccacgtaaagtggtgagacccacgtgggtttcacccaatagaagaatgagtgttagagag--agtgttcatagcatttctctt 45508504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 557469 - 557425
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaata 62  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||    
T  557469 ggatcccacataaagtggtgagacccacatgagtttcacccaata 557425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 25695977 - 25696015
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaa 65  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  25695977 ataaaatggtgagatccacatgagtttcacccaataaaa 25696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 46947845 - 46947804
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagagt 69  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    
T  46947845 ataaagtggtgagacccacatgggtttcaccc-ataaaagagt 46947804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 41873524 - 41873467
Alignment:
Q  22 cccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||| |||||||| |||||  |||||| |||||||||||||||| |||| ||||||||    
T  41873524 cccacataaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttaga 41873467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 51475256 - 51475195
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  51475256 ggatcccacataaagtggtgagatccacatgggtttcacccaataagagggtgagtgttaga 51475195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 30111856 - 30111913
Alignment:
Q  19 gatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgtt 76  Q
    ||||||| |||||||||||||||||||||| |||||||||||||  |||||| |||||    
T  30111856 gatcccacataaagtggtgagatccacatgagtttcacccaatatgagagtgagtgtt 30111913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 37306498 - 37306437
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||| || |||||||||||||| ||||||| ||||||||||||| ||||||| ||||||||    
T  37306498 ggatctcacataaagtggtgagacccacatgagtttcacccaatataagagtgagtgttaga 37306437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 21776591 - 21776539
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||||||||||||  ||||||  ||||||||||||||||||||||| |||||    
T  21776591 ataaagtggtgagactcacatgaatttcacccaataaaagagtgggtattaga 21776539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43480331 - 43480375
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaata 62  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||    
T  43480331 ggatcccacataaagtggtgagacccacatgagtttcacccaata 43480375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 51475275 - 51475312
Alignment:
Q  42 ccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  51475275 ccacatggatttcacccaataagagagtgggtgttaga 51475312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 40699571 - 40699486
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttagatagtcagtgttcttaccatttctc 103  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||| | |||| |||||||| ||  ||||||| || ||||||||    
T  40699571 ggatcccaaataaagtagtgagacccacatgggtttcacccaataagaaagtgagtgttagaaagagagtgttcctagcatttctc 40699486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 32153801 - 32153841
Alignment:
Q  39 gatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  32153801 gatccacatgggtttcacccaataagagagtgagtgttaga 32153841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 42958527 - 42958588
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| |||||||||||||| || |||| |||||| |||||| || |||| ||||||||    
T  42958527 ggatcccacataaagtggtgagacccgcatgagtttcatccaatagaaaagtgagtgttaga 42958588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 19079000 - 19079085
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttagatagtcagtgttcttaccatttctc 103  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||  |||||| |||||| | ||  ||||||| || ||||||||    
T  19079000 ggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgagtgttaaaaagagagtgttcctagcatttctc 19079085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 19126888 - 19126973
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttagatagtcagtgttcttaccatttctc 103  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||  |||||| |||||| | ||  ||||||| || ||||||||    
T  19126888 ggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgagtgttaaaaagagagtgttcctagcatttctc 19126973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 24733934 - 24734019
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttagatagtcagtgttcttaccatttctc 103  Q
    |||||| | ||||||||||||||||||||||||||| || ||| || |||||| |||||||| ||  ||||||| || ||||||||    
T  24733934 ggatccaacataaagtggtgagatccacatgggttttactcaacaagagagtgagtgttagaaagatagtgttcctagcatttctc 24734019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 16173098 - 16173157
Alignment:
Q  20 atcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||| ||| || |||||||||||||||||||||||||||||  |||||| ||||||||    
T  16173098 atcccacatatagaggtgagatccacatgggtttcacccaataggagagtgagtgttaga 16173157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 24886127 - 24886187
Alignment:
Q  19 gatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||||| |||||| ||||||| ||||||| |||||||||||||  |||||| ||||||||    
T  24886127 gatcccacataaagcggtgagacccacatgagtttcacccaataggagagtgagtgttaga 24886187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 31602148 - 31602207
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgtta 77  Q
    ||||||||  ||||||||||||| ||||||| |||||| ||||||| |||||| ||||||    
T  31602148 ggatcccacctaaagtggtgagacccacatgtgtttcatccaataagagagtgagtgtta 31602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 4578672 - 4578724
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||||||||| || | |||| | |||||||||||||||||||| ||||||||    
T  4578672 ataaagtggtgggacctacattgatttcacccaataaaagagtgagtgttaga 4578724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 42780759 - 42780817
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgtt 76  Q
    |||||||| |||||||||||||| ||||||||| ||||| |||||| |||||| |||||    
T  42780759 ggatcccacataaagtggtgagacccacatgggattcactcaataagagagtgagtgtt 42780817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 13639491 - 13639552
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||| || |||||||||||||| ||||||| ||||||||||||| || |||||| ||||||    
T  13639491 ggatctcacataaagtggtgagacccacatgagtttcacccaatagaatagtgggcgttaga 13639552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 28215386 - 28215343
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagagtg 70  Q
    |||||||| ||||| ||||||| |||||||||||||||||||||    
T  28215386 ataaagtgatgagacccacatgagtttcacccaataaaagagtg 28215343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 28215810 - 28215767
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagagtg 70  Q
    |||||||| ||||| ||||||| |||||||||||||||||||||    
T  28215810 ataaagtgatgagacccacatgagtttcacccaataaaagagtg 28215767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 20909385 - 20909343
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaa 60  Q
    |||||||| |||||||||||||| ||||||| |||||||||||    
T  20909385 ggatcccacataaagtggtgagacccacatgagtttcacccaa 20909343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 38602897 - 38602983
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttagatagtcagtgttcttaccatttctct 104  Q
    |||||||| ||||||| ||||||  |||||| |||||||||||||  |||||| ||| |||| ||  ||||||| || |||||||||    
T  38602897 ggatcccacataaagtagtgagactcacatgagtttcacccaataggagagtgagtgctagaaagaaagtgttcctagcatttctct 38602983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 1719145 - 1719104
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagag 68  Q
    ||||||||||||||| |||||| |||| ||||||||||||||    
T  1719145 ataaagtggtgagattcacatgagttttacccaataaaagag 1719104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 54187021 - 54186960
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| ||||| ||||||||| |||||| |||||||||||||  ||||||  |||||||    
T  54187021 ggatcccacataaaatggtgagattcacatgagtttcacccaataggagagtgaatgttaga 54186960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 28215831 - 28215875
Alignment:
Q  35 gtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||| |||| || |||||||||||||| |||||||||||||||    
T  28215831 gtgagacccacgtgagtttcacccaataagagagtgggtgttaga 28215875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 9132324 - 9132272
Alignment:
Q  27 ataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||| |||||||| |||| ||||||||||||||||| |||||| ||||||||    
T  9132324 ataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttaga 9132272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 5140062 - 5140001
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    |||||||| |||||||||||| | || |||| |||||||||||||  |||||| ||||||||    
T  5140062 ggatcccacataaagtggtgaaacccgcatgagtttcacccaataggagagtgagtgttaga 5140001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 6951786 - 6951830
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaata 62  Q
    |||||||| |||||||||||||| ||||||| |||||| ||||||    
T  6951786 ggatcccacataaagtggtgagacccacatgagtttcatccaata 6951830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 7709835 - 7709895
Alignment:
Q  19 gatcccatataaagtggtgagatccacatgggtttcacccaataaaagagtgggtgttaga 79  Q
    ||||||| |||||||||||||  ||||||| ||||||||| |||  |||||| ||||||||    
T  7709835 gatcccacataaagtggtgagtcccacatgagtttcaccctataggagagtgagtgttaga 7709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 7447658 - 7447614
Alignment:
Q  18 ggatcccatataaagtggtgagatccacatgggtttcacccaata 62  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||    
T  7447658 ggatcccacataaagtggtgagacccacatgagcttcacccaata 7447614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University