View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_low_21 (Length: 235)
Name: NF14802_low_21
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 53087336 - 53087507
Alignment:
| Q |
1 |
tgagtaagggttttagaggcaggaaagctatagtgttgaattgaatttgagggtaataaatgaaaataaaatcctattacgcgataaaat------nnnn |
94 |
Q |
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| T |
53087336 |
tgagtaagggttttagcggcaggaaagctatagtgttgaattgaatttgaggggaataaatgaaaataaaatcctattacgcgataaaataaaataaaaa |
53087435 |
T |
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| Q |
95 |
nnnttgaatgaatattttctctaaatgggagcgataagtcatgcgatgtgaatgagattgtccaaagctaac |
166 |
Q |
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| T |
53087436 |
aaattgaatgaatattttctctcaatgggagcgataagtcatgcgatgtgaatgagattgtccaaagctaac |
53087507 |
T |
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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 27744571 - 27744614
Alignment:
| Q |
192 |
ttgatggatgataatgataaagcagcagagaatgaatcaaattc |
235 |
Q |
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| T |
27744571 |
ttgatggatgataatgataaagcagcagagaatgaatcaaattc |
27744614 |
T |
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