View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14802_low_24 (Length: 213)
Name: NF14802_low_24
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 35230460 - 35230644
Alignment:
| Q |
11 |
cgaagaatatggtttgcatttcattgagcaaaaagttttagaatgaggttgaaagtaatctaataagcctcagagttatatttttaatactcgtcaaaga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230460 |
cgaataatatggtttgcatttcattgagcaaaaagttttagaatgaggttgaaagtaatctaataagcctcagagttatatttttaatactcgtcaaaga |
35230559 |
T |
|
| Q |
111 |
ttgagtttcttatactccagtcaatgcacatttcccaaatgnnnnnnnnttattgcagtgtagtacacactctaatatcatattt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35230560 |
ttgagtttcttatactccagtcaatgcacatttcccaaatgaaaaaaaattattgtagtgtagtacacactctaatatcatattt |
35230644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University