View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14802_low_3 (Length: 499)
Name: NF14802_low_3
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 5 - 483
Target Start/End: Original strand, 2050508 - 2050986
Alignment:
| Q |
5 |
taagttaaggtattcaaacttagccttttcttttaatgaattgcagcgagaccagtctgttggttacaatatatcgtcgcatatttaattggtgttaata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2050508 |
taagttaaggtattcaaacttagccttttcttttaatgaattgcagcgagaccactctgttggttacaatatatcgtcgcatatttaattggtgttaata |
2050607 |
T |
|
| Q |
105 |
ctttaatattcattgtttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagc |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2050608 |
ctttaatattcattgtttattcttacagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactatttgaattgatgtcagaagc |
2050707 |
T |
|
| Q |
205 |
tttaggactgaatccaaaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgact |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2050708 |
tttaggactgaatccaaaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgact |
2050807 |
T |
|
| Q |
305 |
gtcggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgata |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2050808 |
gtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctttatgaagataaatggattgata |
2050907 |
T |
|
| Q |
405 |
taacacctgtatctggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatat |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2050908 |
taacacctgtatctggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatat |
2050986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 123 - 487
Target Start/End: Original strand, 2029335 - 2029699
Alignment:
| Q |
123 |
attcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatccaaa |
222 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
2029335 |
attcttgcagagatatactactagaatatgggaaacaggtgatgaatctaggaactttgctgtttgaattgttgtcacaagctttaggtttgaatccaaa |
2029434 |
T |
|
| Q |
223 |
ccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcat |
322 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2029435 |
ccatctaaaagatatgggttgtgccgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaacaaagcat |
2029534 |
T |
|
| Q |
323 |
tctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggag |
422 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2029535 |
tgtgacaatgatttcctcacagtgcttctccaagaccatattggtggcctccaagttctttatgaagataaatggattgatataacacctgtacctggag |
2029634 |
T |
|
| Q |
423 |
ctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatattgat |
487 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2029635 |
ctctcgtagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtttatattgat |
2029699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 124 - 484
Target Start/End: Original strand, 2057860 - 2058220
Alignment:
| Q |
124 |
ttcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatccaaac |
223 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
2057860 |
ttcttgcagagatgtgatactataatatgggaaacaagtgatgaatctaggaactttactgtttgaattgttgtcagaagctttaggtttgaatccaaac |
2057959 |
T |
|
| Q |
224 |
catctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcatt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2057960 |
catctaaaagatatgggttgtgctgaagggctaattgctctttgtcattattatccttcttatcccgaaccagaattgactgtgggaacaaccaagcatt |
2058059 |
T |
|
| Q |
324 |
ctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagc |
423 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2058060 |
ctgataatgatttcctgacaatgcttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgtacctggagc |
2058159 |
T |
|
| Q |
424 |
tctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatt |
484 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
2058160 |
tctcctagttaatgttggtgatcttcttcaggcaagttttatgcattcttatgtgtatatt |
2058220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 127 - 484
Target Start/End: Original strand, 2055039 - 2055396
Alignment:
| Q |
127 |
ttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatccaaaccat |
226 |
Q |
| |
|
|||||||||| || | ||| |||||||||||| ||||||||||||| |||||| | ||||||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
2055039 |
ttgcagagatatactgctacgatatgggaaacacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccat |
2055138 |
T |
|
| Q |
227 |
ctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctg |
326 |
Q |
| |
|
| |||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2055139 |
ttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctg |
2055238 |
T |
|
| Q |
327 |
ataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctct |
426 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2055239 |
ataatgatttcctcacagtgcttcttcaagaccatattggtggcctccaagttctttatgacgataaatggattgatataacacctgtatctggagctct |
2055338 |
T |
|
| Q |
427 |
catagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatt |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
2055339 |
aatagttaatgttggtgatcttttgcaggcaagttttatgcatacttatgtgtatatt |
2055396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 121 - 484
Target Start/End: Original strand, 2033892 - 2034255
Alignment:
| Q |
121 |
ttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatcca |
220 |
Q |
| |
|
|||||||||||||||| || | || ||||||||||| | ||||||||||||| |||||| | ||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
2033892 |
ttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatcca |
2033991 |
T |
|
| Q |
221 |
aaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagc |
320 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2033992 |
aaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtaggaacaacaaagc |
2034091 |
T |
|
| Q |
321 |
attctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctgg |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
2034092 |
attctgataatgatttcctcacagtgcttctacaagaccatgttggtggtcttcaagttctgtatgacgacaaatggattgatataacacctgtacctgg |
2034191 |
T |
|
| Q |
421 |
agctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatt |
484 |
Q |
| |
|
||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
2034192 |
agctctcattgttgatgtcggtgatcttctgcaggcaagttttatgtattcttatgtttatatt |
2034255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 121 - 477
Target Start/End: Complemental strand, 1948822 - 1948466
Alignment:
| Q |
121 |
ttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatcca |
220 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||||| |||||||||||||| ||| | |||||||||| |||||||||| ||||| |||| ||| |
|
|
| T |
1948822 |
ttattcttacagagatataaccctagaatatgggaaacacgtgatgaatctagggactatgttgtttgaatttttgtcagaagcattaggtttgaaacca |
1948723 |
T |
|
| Q |
221 |
aaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagc |
320 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||| | |||||||| |||| |
|
|
| T |
1948722 |
aaccatctaaaagatatgggttgtactgaagggctgattgctgtttgccattattatccttcttgtcctgaaccagaactgactatgggaacaactaagc |
1948623 |
T |
|
| Q |
321 |
attctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctgg |
420 |
Q |
| |
|
|||| || || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
1948622 |
attcagaccatagttttctcacagtgcttctacaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgcaactgg |
1948523 |
T |
|
| Q |
421 |
agctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgt |
477 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1948522 |
agctctcatagttaatattggtgatcttttgcaggcaagttttatgtattcttatgt |
1948466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 127 - 482
Target Start/End: Original strand, 2037462 - 2037817
Alignment:
| Q |
127 |
ttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatccaaaccat |
226 |
Q |
| |
|
|||||||||| || | ||||||||||| ||||| ||| |||||||| || ||||||||| ||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
2037462 |
ttgcagagatatacttctagaatatggaaaacacatgacaaatctagggaccttactgttttaattgttatcagaagctttaggtctgaatccaaaccat |
2037561 |
T |
|
| Q |
227 |
ctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctg |
326 |
Q |
| |
|
||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| | |||||||| | |
|
|
| T |
2037562 |
ctaaaagatatggattgtgctaaaggactatttgctctttgccattattatccttcttgtccggaaccagaattgactgtgggaacagccaagcattcag |
2037661 |
T |
|
| Q |
327 |
ataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctct |
426 |
Q |
| |
|
| ||| ||| |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2037662 |
accatggttttctcacagtgcttatccaagaccatattggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctct |
2037761 |
T |
|
| Q |
427 |
catagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtata |
482 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||| | | |||||||||| |
|
|
| T |
2037762 |
catagttaatattggtgatcttctgcaggcaagttttctgtgtccgtatgtgtata |
2037817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 127 - 484
Target Start/End: Original strand, 10768363 - 10768720
Alignment:
| Q |
127 |
ttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatg-tcagaagctttaggactgaatccaaacca |
225 |
Q |
| |
|
|||||||||| || | ||||||||||| ||||| ||| || ||||| |||||| |||||||| | ||| |||||||||||||| |||||||||||||| |
|
|
| T |
10768363 |
ttgcagagatatattgctagaatatggaaaacacatgagaaacctagggactttattgtttgaact-atgctcagaagctttaggtctgaatccaaacca |
10768461 |
T |
|
| Q |
226 |
tctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattct |
325 |
Q |
| |
|
|||||||||||| | |||||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
10768462 |
tctaaaagatattgattgtgctgaaggattacttgctctcggtcattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattct |
10768561 |
T |
|
| Q |
326 |
gataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctc |
425 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
10768562 |
gataatgatttcctcactgtgcttctccaagaccatattggtggcctccaagttctttatcaggataaatggattgatattacacctgttcctggggctc |
10768661 |
T |
|
| Q |
426 |
tcatagttaatgttggtgatcttttgcaggcaagttttatgtattcttatgtgtatatt |
484 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
10768662 |
tcatagttaatgttggagatcttttgcaggcaagttttctgcattcttatgtgcatatt |
10768720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 120 - 463
Target Start/End: Original strand, 2046708 - 2047037
Alignment:
| Q |
120 |
tttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatcc |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||| | || |||| |||||| || |||| |
|
|
| T |
2046708 |
tttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagatttaggtttgcatcc |
2046807 |
T |
|
| Q |
220 |
aaaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaag |
319 |
Q |
| |
|
||| |||||||||||||||| |||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
2046808 |
aaatcatctaaaagatatggattgtactcaagggttatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaag |
2046907 |
T |
|
| Q |
320 |
cattctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctg |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
2046908 |
tattctg--------------acagtgcttctacaagaccatataggtggtctccaagttctttatgaagataaatggattgatatagcacctgtacctg |
2046993 |
T |
|
| Q |
420 |
gagctctcatagttaatgttggtgatcttttgcaggcaagtttt |
463 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2046994 |
gatctctcatagttaatgttggtgatcttctgcaggtaagtttt |
2047037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 2022900 - 2023018
Alignment:
| Q |
264 |
tttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatat |
363 |
Q |
| |
|
|||||||||| |||||| | ||||| ||||||||||||||| | |||| ||| |||||| | ||||| || || |||| |||||||||||||| ||||| |
|
|
| T |
2022900 |
tttgccattactatccttcctgtccagaaccagaattgactttgggaataaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat |
2022999 |
T |
|
| Q |
364 |
cggtggtctccaagttctt |
382 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
2023000 |
tggcggcctccaagttctt |
2023018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 1094256 - 1094306
Alignment:
| Q |
347 |
cttctacaagaccatatcggtggtctccaagttctttatgaagataaatgg |
397 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||| |||||||||||||| |
|
|
| T |
1094256 |
cttctacaagaccaacttggtggtctacaagttcttcatgaagataaatgg |
1094306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 120 - 463
Target Start/End: Complemental strand, 48907119 - 48906776
Alignment:
| Q |
120 |
tttattcttgcagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactgtttgaattgatgtcagaagctttaggactgaatcc |
219 |
Q |
| |
|
|||||||||||||||| || | |||||||| | ||||| ||||||| || ||| |||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
48907119 |
tttattcttgcagagacatactgatagaatatagtaaacaaatgatgaacctgggatttttactatttgaattgctgtcagaagctttaggtctgaatcc |
48907020 |
T |
|
| Q |
220 |
aaaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| ||| || |||| |
|
|
| T |
48907019 |
aaaccatctaaaagatatgggttgtgttgaagggctaattgctgcttgccattattatcctccatgccctgaaccagatttgactgtgggactaaaaaag |
48906920 |
T |
|
| Q |
320 |
cattctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctg |
419 |
Q |
| |
|
|||||||| | || |||||| | ||| |||| ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| | | |||| || || |
|
|
| T |
48906919 |
cattctgacactggtttccttgcggtggttctccaagaccatattggtggcctccaagttctttatcaagataaatgggttgatgtgaaacctatacatg |
48906820 |
T |
|
| Q |
420 |
gagctctcatagttaatgttggtgatcttttgcaggcaagtttt |
463 |
Q |
| |
|
| ||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
48906819 |
ggtctctcgtagttaatgttggtgaccttttgcaggcaagtttt |
48906776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 17183384 - 17183292
Alignment:
| Q |
382 |
ttatgaagataaatggattgatataacacctgtatctggagctctcatagttaatgttggtgatcttttgcaggcaagttttatgtattctta |
474 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
17183384 |
ttatgaaaataaatggattaatataacacctgtaactggagctctcatagttaatgttggcgatcttttgcaggcaagttttatgtactctta |
17183292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 16426124 - 16425974
Alignment:
| Q |
232 |
agatatgggttgtgctgaagggctaat-tgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataa |
330 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||| || |||| |||||||| | ||||||||||||||||| ||| | |||||| ||| || | |||| |
|
|
| T |
16426124 |
agatattggttgtgctga-gggcttatctgcttttggccactattatccatcatgtcctgaaccagaattaactataggaacagtaaaacacgccgatat |
16426026 |
T |
|
| Q |
331 |
tgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctt |
382 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
16426025 |
tgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt |
16425974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 16442402 - 16442252
Alignment:
| Q |
232 |
agatatgggttgtgctgaagggctaat-tgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataa |
330 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||| || |||| |||||||| | ||||||||||||||||| ||| | |||||| ||| || |||| |
|
|
| T |
16442402 |
agatattggttgtgctga-gggcttatctgcttttggccactattatccatcctgtcctgaaccagaattaactttaggaacagtaaaacacgtcgatat |
16442304 |
T |
|
| Q |
331 |
tgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctt |
382 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
16442303 |
tgatttcatcacagtgcttctacaagatcatataggtggcctccaagttctt |
16442252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 16439232 - 16439304
Alignment:
| Q |
331 |
tgatttcctcacagtgcttctacaagaccatatcggtggtctccaagttctttatgaagataaatggattgat |
403 |
Q |
| |
|
||||||| |||| |||||||||||||| |||| |||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
16439232 |
tgatttcatcacggtgcttctacaagatcatacaggtggtctccaagttcttcataaagatatgtggattgat |
16439304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 382
Target Start/End: Complemental strand, 33768580 - 33768473
Alignment:
| Q |
275 |
tatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatatcggtggtctcc |
374 |
Q |
| |
|
|||||||| || |||||||| ||||| ||| | ||||| | ||||| | |||| ||||||| | ||| | |||||||||||||| ||||||||||| | |
|
|
| T |
33768580 |
tatcctccatgccctgaacccgaattaactatgggaacttctaagcacaccgatattgatttcatgacaattcttctacaagaccagatcggtggtcttc |
33768481 |
T |
|
| Q |
375 |
aagttctt |
382 |
Q |
| |
|
|||||||| |
|
|
| T |
33768480 |
aagttctt |
33768473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 461
Target Start/End: Complemental strand, 28735465 - 28735273
Alignment:
| Q |
269 |
cattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatatcggtg |
368 |
Q |
| |
|
||||| |||||| |||||||||||||||| || || | ||||| || || ||||||||| | ||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
28735465 |
cattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatggtagttttctcacagtgcttctccaagaccatattggtg |
28735366 |
T |
|
| Q |
369 |
gtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctctcatagttaatgttggtgatcttttgcaggcaagtt |
461 |
Q |
| |
|
|||| ||||||||||| |||| || ||||| ||| || |||| ||| | | ||||| | |||||| ||||||||||| |||||||||||| |
|
|
| T |
28735365 |
gtcttcaagttctttaccaagaaaagtggatcgatgtaccaccggtacccgaggctcttgttgttaatattggtgatcttctgcaggcaagtt |
28735273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 461
Target Start/End: Complemental strand, 28783606 - 28783339
Alignment:
| Q |
197 |
tcagaagctttaggactgaatccaaaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccag |
296 |
Q |
| |
|
||||||||| | ||| || ||||||||||| ||||||| |||||||||||| | ||| | | | ||| | ||||| |||||| ||||||||||||||| |
|
|
| T |
28783606 |
tcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggattctatcacttagtcattactatcctgcttgtcctgaaccag |
28783507 |
T |
|
| Q |
297 |
aattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttctacaa---gaccatatcggtggtctccaagttctttatgaagataa |
393 |
Q |
| |
|
|||| ||| | ||||| ||||| |||||||||| | ||| |||||| ||||||| ||| || ||||| ||||| ||||||||| || | | | || |
|
|
| T |
28783506 |
aattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattggtggcctccaagtttttcaccagaacaa |
28783407 |
T |
|
| Q |
394 |
atggattgatataacacctgtatctggagctctcatagttaatgttggtgatcttttgcaggcaagtt |
461 |
Q |
| |
|
|||||||||||| | || || ||| ||||| | |||||||||||||||||| | |||||||||| |
|
|
| T |
28783406 |
gtggattgatatacctccaatacctgatgctcttgttgttaatgttggtgatcttctacaggcaagtt |
28783339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 263 - 382
Target Start/End: Complemental strand, 28742553 - 28742434
Alignment:
| Q |
263 |
ctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccata |
362 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | || || | ||||| | || |||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
28742553 |
ctttgccattactatcctgcttgtcctgaaccacatttaacgatgggaaccgccaaacattctgatagtagtttcctcacagtgcttcttcaagaccata |
28742454 |
T |
|
| Q |
363 |
tcggtggtctccaagttctt |
382 |
Q |
| |
|
| ||||| || ||||||||| |
|
|
| T |
28742453 |
ttggtggccttcaagttctt |
28742434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 29463893 - 29463943
Alignment:
| Q |
347 |
cttctacaagaccatatcggtggtctccaagttctttatgaagataaatgg |
397 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||| |||||||||||||| |
|
|
| T |
29463893 |
cttctacaagaccaacttggtggtcttcaagttcttcatgaagataaatgg |
29463943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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