View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_low_4 (Length: 455)
Name: NF14802_low_4
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 607341 - 607770
Alignment:
| Q |
1 |
tatatgaaccaaagttttgaaattagtgacccattttttcccttgtttggtgtgagacttgctttcggtcacgtatcccttttcctttatgaatgataag |
100 |
Q |
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| T |
607341 |
tatatgaaccaaagttttgaaattagtgacccattttttcccttgtttggtgtgagacttgctttcggtcacgtatcccttttcctttatgaatgataag |
607440 |
T |
|
| Q |
101 |
gattaacaaaaaggatgtagatttcattaaggatataagaatgaatatatggaaattttatcatacaaaatatgacatgataacaaaaatcatagataca |
200 |
Q |
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| T |
607441 |
ggttaacaaaaaggatgtagatttcattaaggatataagaatgaatagatggaaattttatcatacaaaatatgacatgataacaaaaatcatagataca |
607540 |
T |
|
| Q |
201 |
acatatgacatgataacnnnnnnnncaccaaccatgcatattgggaaaatgcgcaaccagcacc-----accaggtctgaatacaacccgaagcagcaag |
295 |
Q |
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| T |
607541 |
acatatgacatgataac-gaaaaaacaccaaccatgcatattgggaaaatgcgcaaccagcaccaccagaccaggtctgagtacaacctgaagcagcaag |
607639 |
T |
|
| Q |
296 |
atgtttgttgttgtcttcctcagtatgcgaggttcatgtgctctgtgttttatgtgacgtatcttgtgtacacgttgtgtcttgtgcatcattgcactat |
395 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
607640 |
atgtttgttgttgtgttcctcagtatgcgaggttcatgtgctctgtgtcttatgtgacgtatcttgtgtacacgttgtgtcttgtgcatcattgcactat |
607739 |
T |
|
| Q |
396 |
cctctgtaacgcctctttttacgatgtccat |
426 |
Q |
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| T |
607740 |
cctctgtaacgcctctttttacgatgtccat |
607770 |
T |
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