View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_low_5 (Length: 379)
Name: NF14802_low_5
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 8698784 - 8699133
Alignment:
| Q |
18 |
gatttatgtgccttttgtaatcaaggttagtttttgtgacaagaaaactaagaaagtcttcaaaggcaataaaggatatatatgcaactcaaattttttg |
117 |
Q |
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| T |
8698784 |
gatttatgtgccttttgtaatcaaggttagtttttgtgacaagaaaactaagaaa-------aagccaataaaggatatatatgcaactcaaaaattttg |
8698876 |
T |
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| Q |
118 |
gtaaattcaaatccaaaacttcaagtcctttagcttcttgagtctgactaagaactcttaaataaacatacaaacagataagagacaagagaggaagcaa |
217 |
Q |
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|| |||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
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| T |
8698877 |
gtgaattgaaatc-aaaacttcaagtccttcagcttcttgagtcaaactaagaactctttaataaacacacaaacaggtaagagacaagagaggaagcaa |
8698975 |
T |
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| Q |
218 |
agaggaggctaagaaattattgttgtcttgtcttccacttgtgacatatatttatcaagtgtcttgtttagtatttaaccttatgtttccacaataataa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8698976 |
tgaggaggctaagaaattattgttgtcttgtcttccacttgtgacatatatttatcaagtgtcttgtttagtatttaaccttatgtttccacaataataa |
8699075 |
T |
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| Q |
318 |
cgattttacct---tgacttaagtggtctat-actctatatcattgtgcccttcattt |
371 |
Q |
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| T |
8699076 |
cgattttaccttgatgacctaagtggtctataactctatatcattgtgcccttcattt |
8699133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 9050671 - 9051020
Alignment:
| Q |
18 |
gatttatgtgccttttgtaatcaaggttagtttttgtgacaagaaaactaagaaagtcttcaaaggcaataaaggatatatatgcaactcaaattttttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| |
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| T |
9050671 |
gatttatgtgccttttgtaatcaaggttagtttttgtgacaagaaaactaagaaa-------aagccaataaaggatatatatgcaactcaaaaattttg |
9050763 |
T |
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| Q |
118 |
gtaaattcaaatccaaaacttcaagtcctttagcttcttgagtctgactaagaactcttaaataaacatacaaacagataagagacaagagaggaagcaa |
217 |
Q |
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|| |||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
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| T |
9050764 |
gtgaattgaaatc-aaaacttcaagtccttcagcttcttgagtcaaactaagaactctttaataaacacacaaacaggtaagagacaagagaggaagcaa |
9050862 |
T |
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| Q |
218 |
agaggaggctaagaaattattgttgtcttgtcttccacttgtgacatatatttatcaagtgtcttgtttagtatttaaccttatgtttccacaataataa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9050863 |
tgaggaggctaagaaattattgttgtcttgtcttccacttgtgacatatatttatcaagtgtcttgtttagtatttaaccttatgtttccacaataataa |
9050962 |
T |
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| Q |
318 |
cgattttacct---tgacttaagtggtctat-actctatatcattgtgcccttcattt |
371 |
Q |
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||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
9050963 |
cgattttaccttgatgacctaagtggtctataactctatatcattgtgcccttcattt |
9051020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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