View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14802_low_7 (Length: 336)
Name: NF14802_low_7
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 41 - 329
Target Start/End: Complemental strand, 2490060 - 2489772
Alignment:
| Q |
41 |
tgcacattctctaaacgccagcaatgtgaaatggccttgaagatccttatcatctgaactaactttttggagtgagatccaaatttatttaacacgacag |
140 |
Q |
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| T |
2490060 |
tgcacattctctaaacgccagcaatgtgaaatggccttgaagatccttatcatctgaactaactttttggagtgagatccaaatttatttaacacgacag |
2489961 |
T |
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| Q |
141 |
attggaaaatttctcttacttgtgctaaacaatctgagacatagtcatattgtacccaagagttgactttgcacataaaaaataatagtgttaattaaaa |
240 |
Q |
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| T |
2489960 |
attggaaaatttctcttacttgtactaaacaatctgagacatagtcatattgtacccaagagttgactttgcacataaaaaataatagtgttaattaaaa |
2489861 |
T |
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| Q |
241 |
aagaaatgtcactgtttgaccaattgatttaagttcaaaatttgtaacgtagggtgacacactcattgcttttgatcttcctcttctct |
329 |
Q |
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| T |
2489860 |
aagaaatgtcactgtttgaccaattgatttaagttcaaaatttgtaacgtagggtgacacactcattgcttttgatcttcctcttctct |
2489772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 2493169 - 2493048
Alignment:
| Q |
209 |
ttgcacataaaaaataatagtgttaattaaaaaagaaatgtcactgtttgaccaattgattt---aagttcaaaatttgtaacgtagggtgacacactca |
305 |
Q |
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| T |
2493169 |
ttgcacataaaataaaatagtgctaattaaaaaaaaaa-gtcattatttgactaactgataataaaagttcaaaatttgtaacgtagg-tgacacattca |
2493072 |
T |
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| Q |
306 |
ttgcttttgatcttcctcttctct |
329 |
Q |
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| T |
2493071 |
ttgcttttgatcttcatcttctct |
2493048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 2493271 - 2493225
Alignment:
| Q |
144 |
ggaaaatttctcttacttgtgctaaacaatctgagacatagtcatat |
190 |
Q |
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|||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
2493271 |
ggaaaatttctcttacttgtactaaacaatctgaaagatagtcatat |
2493225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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