View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14802_low_8 (Length: 330)
Name: NF14802_low_8
Description: NF14802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14802_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 37191511 - 37191829
Alignment:
| Q |
1 |
taagttaagttatgtagagtgatggtgtcatgttgctatgtatctggtcttgttttgcagtttggaccgggtgggcatgcatatgtttatctttgctacg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37191511 |
taagttaagttatgtagagtgatgttgtcatgttgctatgtatctggtcttgttttgcagtttggaccgggtgggcatgcatatgtttatctttgctacg |
37191610 |
T |
|
| Q |
101 |
gtctccacacaatgctgaatgttgttgctgataaggaaggagttggagctggtgttttgatacgttcttgtgcccccatttgcggtagtactcaataata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37191611 |
gtctccacacaatgctgaatgttgttgctgataaggaaggagttggagctggtgttttgatacgttcttgtgcccccatttgcggtagtactcaataata |
37191710 |
T |
|
| Q |
201 |
tagctcattcgtagtttaccaataataccaagattttaaatagtgatagagaagatatcaaaaacctcgacgtctccgctaagatcacagaccttatttt |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37191711 |
tagctcattcgtagtttactaataataccaaggttttaaatagtgatagagaagatatcaaaaacctcgatgtctccgctaagatcacagaccttatttt |
37191810 |
T |
|
| Q |
301 |
aaaacacttactgatgatg |
319 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
37191811 |
aaaacacttactaatgatg |
37191829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University