View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14803_high_13 (Length: 296)
Name: NF14803_high_13
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 45393394 - 45393105
Alignment:
| Q |
1 |
ttgtggtaactactgcacaggaatcttttatat--ttgttaatagatggtaatcgagtttcatagtctgcatttggatgggaaagattgatagttttcgc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45393394 |
ttgtggtaactactgcacaggaatcttttatatatttgttaatagatggtaatcaggtttcatagtctgcatttggatgggaaagattgatagttttcac |
45393295 |
T |
|
| Q |
99 |
caccaactatgtgcagatgcttgatcctgctgcacttatcagatggggactagcatattgaactttcctattgtagcgttaaagtgcttgctactaataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393294 |
caccaactatgtgcagatgcttgatcctgctgcacttatcagatggggactagcatattgaactttcctattgtagcgttaaagtgcttgctactaataa |
45393195 |
T |
|
| Q |
199 |
ttacttgaggcatgaaactcatacattgtttgatcatgttgttgagagccttatgccgtaatcatatttattgaacatagaattcatatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393194 |
ttacttgaggcatgaaactcatacattgtttgatcatgttgttgagagccttatgccgtaatcatatttattgaacatagaattcatatt |
45393105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 52739913 - 52739838
Alignment:
| Q |
14 |
tgcacaggaatcttttatatttgtt-aatagatggtaatcgagtttcatagtctgcatttggatgggaaagattga |
88 |
Q |
| |
|
|||| ||||||| |||||||||||| || | ||||| || || ||||||||||||||||||| |||||||| |||| |
|
|
| T |
52739913 |
tgcataggaatcatttatatttgtttaacatatggttattgaatttcatagtctgcatttgggtgggaaaggttga |
52739838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 52739789 - 52739739
Alignment:
| Q |
152 |
catattgaactttcctattgtagcgttaaagtgcttgctactaataattac |
202 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||| ||||||||||| |
|
|
| T |
52739789 |
catattgaactttcctgttgtagttttaaagtgtttgctgctaataattac |
52739739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 31667289 - 31667166
Alignment:
| Q |
71 |
ttggatgggaaagattgatagttttcgccaccaactatgtgcagatgcttgatcctgctgcacttatcagatggggactagcatattgaactttcctatt |
170 |
Q |
| |
|
|||||||| |||| ||||| |||||||| | || ||||| ||| |||||||||||| |||||||||| ||| || ||||||||||||||||| | |
|
|
| T |
31667289 |
ttggatggaaaaggttgattgttttcgcaaataataatgtgtagaagcttgatcctgc---acttatcagaaggg-acaggcatattgaactttcctggt |
31667194 |
T |
|
| Q |
171 |
gtagcgttaaagtgcttgctactaataa |
198 |
Q |
| |
|
|||| ||||||||||||| ||||||| |
|
|
| T |
31667193 |
gtagttttaaagtgcttgccgctaataa |
31667166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University