View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14803_high_19 (Length: 238)
Name: NF14803_high_19
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_high_19 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 18302688 - 18302470
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18302688 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
18302589 |
T |
|
| Q |
118 |
aataaatgnnnnnnnnngggcatctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18302588 |
aataaatg-aaaaaaaggggcatctttcacccagtatcgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
18302490 |
T |
|
| Q |
218 |
ttgaaatatgtaaatttatc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18302489 |
ttgaaatatgtaaatttatc |
18302470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 18032405 - 18032187
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18032405 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
18032306 |
T |
|
| Q |
118 |
aataaatgnnnnnnnnngggcatctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18032305 |
aataaatg-aaaaaaaggggcatctttcacccagtatcgaaggatttgaactaaaattttcagatggataggatatggtattcgtatatctgacacataa |
18032207 |
T |
|
| Q |
218 |
ttgaaatatgtaaatttatc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18032206 |
ttgaaatatgtaaatttatc |
18032187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 13234854 - 13234636
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234854 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
13234755 |
T |
|
| Q |
118 |
aataaatgnnnnnnnnngggcatctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234754 |
aataaatg-aaaaaaaggggcatctttcacccagtatcgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
13234656 |
T |
|
| Q |
218 |
ttgaaatatgtaaatttatc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13234655 |
ttgaaatatgtaaatttatc |
13234636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 6944402 - 6944620
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6944402 |
gaacaagaataatctcggattactttttgaaaaagtagaaatagagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
6944501 |
T |
|
| Q |
118 |
aataaatgnnnnnnnnngggcatctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6944502 |
aataaatg-aaaaaaaggggcatctttcacccagtatcgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
6944600 |
T |
|
| Q |
218 |
ttgaaatatgtaaatttatc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6944601 |
ttgaaatatgtaaatttatc |
6944620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 23059762 - 23059983
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23059762 |
gaacaaaaataatctcggattactttttgaaaaagtagaaatcgaatttttggtagtaataaaactattccaattactaaaattctaaagaaacaatcgt |
23059861 |
T |
|
| Q |
118 |
aataaat-gnnnnnnnnngggcatctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgta-tatctgacacat |
215 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
23059862 |
aataaataaataaaaaaagggcatctttcaccgagtatcgaaggatttgaactaaaatttccagatggataggatatgatatttgtattatctgacacat |
23059961 |
T |
|
| Q |
216 |
aattgaaatatgtaaatttatc |
237 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23059962 |
aattgaaatatgtaaatttatc |
23059983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 5268071 - 5268282
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
5268071 |
gaacaagaataatctcagattagtttttgaaaaagtagaaatcgattttttg-tagtaataaaactattccaattactataattataaagaaacaaacgt |
5268169 |
T |
|
| Q |
118 |
aataaatgnnnnnnnnngggcatctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
217 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5268170 |
aataaatgaaaa-------gcatctttcacccaatatcgaaggatttgaactaagatttccagatggataggatatggtattcatatatctgacacataa |
5268262 |
T |
|
| Q |
218 |
ttgaaatatgtaaatttatc |
237 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
5268263 |
tttaaatatgtaaatttatc |
5268282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 39183011 - 39183108
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
39183011 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgaatttttggtagtaataacattattccaattactaaaattatacagaaacaatc |
39183108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 39183106 - 39183200
Alignment:
| Q |
139 |
atctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatt |
233 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39183106 |
atctttcacccggtatcgaaggatttgaactaagattttcagatggataagatatagtattcgtatatctgacacataatttaaatatgtaaatt |
39183200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 37875040 - 37874822
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37875040 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
37874941 |
T |
|
| Q |
118 |
aataaatgnnnnnnnnngggcatctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataa |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37874940 |
aataaatg-aaaaaaaggggcatctttcacccagtatcgaaggatttgaactaaaattttcagatggataggatatggtattcgtatatctgacacataa |
37874842 |
T |
|
| Q |
218 |
ttgaaatatgtaaatttatc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37874841 |
ttgaaatatgtaaatttatc |
37874822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 45194312 - 45194213
Alignment:
| Q |
138 |
catctttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc |
237 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45194312 |
catcttttaccgagtatcgaaggatttgaactaaaattttcatatagataggatatgatattcgtatatctgacacataattgaaatatgtaaatttatc |
45194213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 17535416 - 17535510
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaa |
113 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||||||||| |||||||||||| |||| |||||||||| | ||| |||||||||||||| |
|
|
| T |
17535416 |
gaacaagaacaatcttagattactttatgaaaaagtagaaatcagacttttggtagtaacaaaaatattccaatt-ccaaatttataaagaaacaa |
17535510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 45195265 - 45195296
Alignment:
| Q |
206 |
tctgacacataattgaaatatgtaaatttatc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45195265 |
tctgacacataattgaaatatgtaaatttatc |
45195296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 44511808 - 44511760
Alignment:
| Q |
187 |
aggatatggtattcgtatatctgacacat-aattgaaatatgtaaattt |
234 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||| |||||||||||||| |
|
|
| T |
44511808 |
aggatatggtattcgtatgtctaacacataaatttaaatatgtaaattt |
44511760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 42913290 - 42913185
Alignment:
| Q |
18 |
gaacaagaataatctcggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42913290 |
gaacaagaataatctctgattactttttgaaaa-gtagaaatcga-tttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgt |
42913193 |
T |
|
| Q |
118 |
aataaatg |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
42913192 |
aataaatg |
42913185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 202952 - 203000
Alignment:
| Q |
151 |
gtattgaaggatttgaactaaaatttccagatggataggatatggtatt |
199 |
Q |
| |
|
||||||||||| |||||| || ||||||| |||||||||||| |||||| |
|
|
| T |
202952 |
gtattgaaggagttgaaccaagatttccaaatggataggatagggtatt |
203000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University