View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_high_3 (Length: 480)
Name: NF14803_high_3
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Complemental strand, 31141520 - 31141071
Alignment:
| Q |
12 |
attatactcattcaaacatatacacaaggaaaataatattgttttcccttattcaaagataaagtcaaggatagtttatcacaagtcacacaacagccaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141520 |
attatactcattcaaacatatacacaaggaaaataatattgctttcccttattcaaagataaagtcaaggatagtttatcacaagtcacacaacagccaa |
31141421 |
T |
|
| Q |
112 |
aatggatcaaagattttgaaagtgaaaggtaaaggccgttttaaataatctatcttgagttaataattcaatagtttggaaactaaggcaaatttttcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31141420 |
aatggatcaaagattttgaaagtgaaaggtaaaggccgttttaaataatctatcttgagtcaataattcaatagtttggaaactaaggcaaatttttcaa |
31141321 |
T |
|
| Q |
212 |
tattttaataatccttgacttaaggataattaatggaaggaagaaggacaggtcattaagtggggcccacatacaatttcctgctgcattcctattccaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141320 |
tattttaataatccttgacttaaggataattaatggaaggaagaaggacaggtcattaagtggggcccacatacaatttcctgctgcattcctattccaa |
31141221 |
T |
|
| Q |
312 |
tttcatgaccatcttccaaactcttgattttatatattaaaagtgcattcctattgaatatagtaaaaaatactctatatggcaacgtcaagttcattca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31141220 |
tttcatgaccatcttccaaactcttgattttatatattaaaagtgcattcctattgaatatagtaaaaaatactctatatggcaacatcaagttcattca |
31141121 |
T |
|
| Q |
412 |
gccatattaattaatggcaaccttagtaatcattaataaccaatactaat |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141120 |
gccatattaattaatggcaaccttagtaatcattaataaccaatactaat |
31141071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 31192431 - 31192542
Alignment:
| Q |
12 |
attatactcattcaaacatatacacaaggaaaataatattgttttcccttattcaaagataaagtcaaggatagtttatcacaagtcacacaacagccaa |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |
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| T |
31192431 |
attatactcattcaaacatagacacaaggaaaataatattgttttcccttattcaaagataaagttaaggagag-ttatcacaagtcacacaacagccaa |
31192529 |
T |
|
| Q |
112 |
aatggatcaaaga |
124 |
Q |
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||||||||||||| |
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| T |
31192530 |
aatggatcaaaga |
31192542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 231
Target Start/End: Original strand, 31197283 - 31197456
Alignment:
| Q |
66 |
aaagataaagtcaaggatagtttatcacaagtcacacaacagccaaaatggatcaaagattttgaaagtgaaaggtaaa-ggccgttttaaataatc--t |
162 |
Q |
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|||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| | |
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| T |
31197283 |
aaagttaaagtcaaggagagtc-atcacaagtcacacaacagccaaaatagatcaaagattttgaaagtgaaaggtaaacacccgttttgaataatctat |
31197381 |
T |
|
| Q |
163 |
atcttgagttaataattcaatagtttggaaact-aaggca--aat---ttttcaatattttaataatccttgact |
231 |
Q |
| |
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|||||| || || |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
31197382 |
atcttgcgtcaagaattcaatagtttggaaactaaaggcaacaatgtattttcaatattttaataatccttgact |
31197456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 31197476 - 31197537
Alignment:
| Q |
280 |
acatacaatttcctgctgcattcctattccaatttcatgaccatcttccaaactcttgatttt |
342 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31197476 |
acatacaatttcctg-tgcattcctattccaatttcatgaccatcttccaaactcttgatttt |
31197537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 31197935 - 31197988
Alignment:
| Q |
408 |
ttcagccatattaattaatggcaaccttagtaatcattaataaccaatactaat |
461 |
Q |
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|||||||||||||||||||| ||||| || |||||||||||| |||||||||| |
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| T |
31197935 |
ttcagccatattaattaatgacaaccctataaatcattaataatcaatactaat |
31197988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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