View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_high_5 (Length: 437)
Name: NF14803_high_5
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 12838920 - 12838502
Alignment:
| Q |
1 |
cgagcgaccaaaatgcaaagcgtcaaaatatatatcctaaaatggtacaaattcaaaccattaatttatttcattgccctaacaaagtctttatataatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12838920 |
cgagcgaccaaaatgcaaagcgtcaaaatatatatcctaaaatggtacaaattcaaaccattaatttatttcattgccctaacaaagtctttatataatc |
12838821 |
T |
|
| Q |
101 |
catccctactatcctcttatcatttgtgttcttcaatcaattaagagaagcataatcactcttattgtcaaaattaaaacaaaatgaaggtttcaagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
12838820 |
catccctactatcctcttatcatttgtgttcttcaatcaattaagagaagcataatcactcttattgttaaaattaaaacaaaatgaagatttcaagttt |
12838721 |
T |
|
| Q |
201 |
atcaattatcattctcttcaccatttcatccattttcttcataccaccaatccaatgccatcaaccaccaaagctagacttaattaaagctatatgtcga |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12838720 |
atcaattatcattctcttaaccatttcatccattttcttcataccactaatccaatgccatcaaccaccaaagctagacttaattaaagctatatgtcga |
12838621 |
T |
|
| Q |
301 |
aaaacacctcattactatctttgcgttataacactaaaatcaaatttatatgcagtaaagtatattgcatcaaataccgacatctctggatttgtccgcg |
400 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |
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| T |
12838620 |
aaaacacctcattaccatctttgcgttataacattaaaatcaaatttatatgcagtaaagtatattgcatcaaatactgacatctctggatttgttcgtg |
12838521 |
T |
|
| Q |
401 |
taacactcaaggttgtcgc |
419 |
Q |
| |
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| T |
12838520 |
taacactcaaggttgtcgc |
12838502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 12832096 - 12831675
Alignment:
| Q |
1 |
cgagcgaccaaaatgcaaagcgtcaaaatatatatcctaaaatggtacaaattcaaaccattaatttatttcattgccctaacaaagtctttat---ata |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12832096 |
cgagcgaccaaaatgcaaagcgtcaaaatatatatcctaaaatggtacaaattcaaaccattaatttatttcattgccctaacaaagtctttattatata |
12831997 |
T |
|
| Q |
98 |
atccatccctactatcctcttatcatttgtgttcttcaatcaattaagagaagcataatcactcttattgtcaaaattaaaacaaaatgaaggtttcaag |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
12831996 |
atccatccctactatcctcttatcatttgtgttcttcaatcaattaagagaagcataatcactcttattgttaaaattaaaacaaaatgaagatttcaag |
12831897 |
T |
|
| Q |
198 |
tttatcaattatcattctcttcaccatttcatccattttcttcataccaccaatccaatgccatcaaccaccaaagctagacttaattaaagctatatgt |
297 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12831896 |
tttttcaattatcattctcttaaccatttcatccattttcttcataccaccaattcaatgccatcaaccaccaaagctagacttgattaaagctatatgt |
12831797 |
T |
|
| Q |
298 |
cgaaaaacacctcattactatctttgcgttataacactaaaatcaaatttatatgcagtaaagtatattgcatcaaataccgacatctctggatttgtcc |
397 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
12831796 |
cgaaaaacacctcattaccatctttgcgttataacattaaaatcaaatttatatgcagtaaagtatattgcatcaaatactgacatctctggatttgttc |
12831697 |
T |
|
| Q |
398 |
gcgtaacactcaaggttgtcgc |
419 |
Q |
| |
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| |||||||||||||||||||| |
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|
| T |
12831696 |
gtgtaacactcaaggttgtcgc |
12831675 |
T |
|
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