View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14803_high_9 (Length: 317)

Name: NF14803_high_9
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14803_high_9
NF14803_high_9
[»] chr4 (7 HSPs)
chr4 (19-282)||(24899185-24899449)
chr4 (70-254)||(41495976-41496153)
chr4 (176-241)||(56329208-56329273)
chr4 (270-311)||(24899552-24899593)
chr4 (97-193)||(18102804-18102896)
chr4 (141-193)||(14271043-14271095)
chr4 (193-311)||(18102670-18102792)
[»] chr6 (3 HSPs)
chr6 (97-295)||(33293480-33293679)
chr6 (24-195)||(12636066-12636235)
chr6 (162-293)||(1825887-1826016)
[»] chr3 (1 HSPs)
chr3 (97-289)||(5411360-5411553)
[»] chr2 (4 HSPs)
chr2 (60-299)||(16644318-16644558)
chr2 (97-193)||(37860413-37860505)
chr2 (204-307)||(45134656-45134758)
chr2 (193-311)||(37860279-37860401)
[»] chr7 (2 HSPs)
chr7 (162-276)||(42022821-42022935)
chr7 (205-273)||(37486067-37486137)
[»] chr1 (1 HSPs)
chr1 (172-275)||(31231087-31231189)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 24899185 - 24899449
Alignment:
Q  19 aaggtaaggtgtttgtgcaagaccaatggaatgtaaaga-ctaagatagactcaagagaatataatagctcaacttgattaaagattatgatgagttaat 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  24899185 aaggtaaggtgtttgtgcaagaccaatggaatgtaaagatctaagatagacccaatagaatataatagctcaactagattaaagattatgatgagttaat 24899284  T
Q  118 tgaattatacatatttcagaggtgagtcatcatgttttaaaagaatctagagagatcctttgtgatgagtcattggaatgtcaatactataaataatggg 217  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||     
T  24899285 tgaattatacatattttagaggtgagtcatcatgttttaaaaggatctagagagatcatttgtgacgagtcattgaaatgtcaatactataaataatgga 24899384  T
Q  218 ttggtcattgtaatcataatcaaaataaatgaatgaagaaatagtttgttagaatagttatagtt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24899385 ttggtcattgtaatcataatcaaaataaatgaatgaagaaatagtttgttagaatagttatagtt 24899449  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 254
Target Start/End: Original strand, 41495976 - 41496153
Alignment:
Q  70 caagagaatataatagctcaacttgattaaagattatgatgagttaattgaattatacatatttcagaggtgagtcatcatgttttaaaagaatctagag 169  Q
    ||||||||||||||||| |||  | | ||||||||||||||||||||||| ||     |||||| |||| | |||||||||||| || |||||| |||||    
T  41495976 caagagaatataatagc-caagctaaataaagattatgatgagttaattgcat-----atattttagagattagtcatcatgttctagaagaatatagag 41496069  T
Q  170 agatcctttgtgatgagtcattggaatgtcaatactataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaa 254  Q
    | ||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| | ||| |||| ||||||||||    
T  41496070 atatcatttgtgatgagtcattagaatgtcaatgctataaatagtgggttggtcattgtaatccttatc-aaatgaatgaatgaa 41496153  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 56329208 - 56329273
Alignment:
Q  176 tttgtgatgagtcattggaatgtcaatactataaataatgggttggtcattgtaatcataatcaaa 241  Q
    |||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||    
T  56329208 tttgcgatgagtcattggaatgtcaatgctataaataattggttggtcattataatcattatcaaa 56329273  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 24899552 - 24899593
Alignment:
Q  270 aatagttatagttatagcttttagtcacttttagaataattt 311  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  24899552 aatagttatagttatagcttttagtcacttttagagtaattt 24899593  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 18102896 - 18102804
Alignment:
Q  97 taaagattatgatgagttaattgaattatacatatttcagaggtgagtcatcatgttttaaaagaatctagagagatcctttgtgatgagtcattgg 193  Q
    ||||||||||||||||||| |||  ||| | |||||  |||||||||||||||||||||| |||  | |||||||| || || ||||||||||||||    
T  18102896 taaagattatgatgagttagttg--ttagatatatt--agaggtgagtcatcatgttttagaagggtgtagagagacccgttatgatgagtcattgg 18102804  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 14271095 - 14271043
Alignment:
Q  141 gagtcatcatgttttaaaagaatctagagagatcctttgtgatgagtcattgg 193  Q
    |||||||||| ||||| ||| |||||||||||||| || ||||||||||||||    
T  14271095 gagtcatcatcttttagaaggatctagagagatccattatgatgagtcattgg 14271043  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 18102792 - 18102670
Alignment:
Q  193 gaatgtcaatactataaataatgggttggtcattgtaatcataatcaa---aataaatgaatgaagaa-atagtt-tgttagaatagttatagttatagc 287  Q
    |||||||||| |||||||| |||   |||||||||||||||| |||||   ||| |||||||||||||  ||||| ||||||||| | ||||||| ||||    
T  18102792 gaatgtcaatgctataaattatgtagtggtcattgtaatcattatcaaatgaatgaatgaatgaagaatttagttatgttagaat-gatatagttgtagc 18102694  T
Q  288 ttttagtcacttttagaataattt 311  Q
    ||||  || |||||||| ||||||    
T  18102693 ttttgctcccttttagagtaattt 18102670  T

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Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 295
Target Start/End: Original strand, 33293480 - 33293679
Alignment:
Q  97 taaagattatgatgagttaattgaattatacatatttcagagg-tgagtcatcatgttttaaaagaatctagagagatccttt--gtgatgagtcattgg 193  Q
    ||||||||||||||||||| ||| ||||    ||||| || || ||||||| |||| | || ||| |||||||||||||||||  |||||||||||||||    
T  33293480 taaagattatgatgagttagttgtattagg--tattttagtggatgagtcaccatgctctagaaggatctagagagatcctttttgtgatgagtcattgg 33293577  T
Q  194 aatgtcaatactataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaagaaatagtttgttagaatagttatagttatagcttttag 293  Q
    |||| |||| ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||| |   ||||||||||||  |||||| ||||||||||    
T  33293578 aatgccaatgctataaataatgggttgatcattgtaatcattatcgaaatgaatgaatgaagaatttagttgttagaatagccatagttgtagcttttag 33293677  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 12636066 - 12636235
Alignment:
Q  24 aaggtgtttgtgcaagaccaatggaatgtaaagact-aagatagactcaagagaatataatagctcaacttgattaaagattatgatgagttaattgaat 122  Q
    |||||||||||| |||||||||||||||||| ||||  ||||||   |||||||||||||||   ||| | || |||||||||| |||||||||||  ||    
T  12636066 aaggtgtttgtgtaagaccaatggaatgtaatgactcgagataggtccaagagaatataatattccaagtaga-taaagattataatgagttaattacat 12636164  T
Q  123 tatacatatttcagaggtgagtcatcatgttttaaaagaatctagagagatcctttgtgatgagtcattggaa 195  Q
    |||  |||||| ||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||||    
T  12636165 tat--atattttagaggtgagtcatcatgttttaagaggatttagagagatcttttgtgatgagtcattggaa 12636235  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 162 - 293
Target Start/End: Original strand, 1825887 - 1826016
Alignment:
Q  162 atctagagagatcctttgtgatgagtcattggaatgtcaatactataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaagaaatag 261  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||  |  |||| ||||| ||||||| |||    
T  1825887 atctagagagatcctttgtgatgagtcattgaaatgtcaatgctataaataatggttttgtcattgtaatcattgt-gaaatgaatgagtgaagaattag 1825985  T
Q  262 tttgttagaatagttatagttatagcttttag 293  Q
    ||| ||||||||| | ||||| ||||||||||    
T  1825986 ttttttagaatag-tgtagttgtagcttttag 1826016  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 97 - 289
Target Start/End: Original strand, 5411360 - 5411553
Alignment:
Q  97 taaagattatgatgagttaattgaattatacatatttcagaggtgagtcatcatgttttaaaagaatctagagagatcctttgtgatgagtcattggaat 196  Q
    ||||||||||||||||||  ||| |||| |  ||||| ||||| ||||||||||||| || ||| ||||||||||||||||| ||||||||||||| |||    
T  5411360 taaagattatgatgagttggttgcattaga--tattttagaggcgagtcatcatgttctagaaggatctagagagatcctttatgatgagtcattgtaat 5411457  T
Q  197 gtcaatactataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaagaaa----tagtttgttagaatagttatagttatagctt 289  Q
    | ||||  |||||||||||   || ||||||||| ||| |||||| | |||||||||||||     |||||||||||||||||||||||| ||||||    
T  5411458 gccaatgatataaataatgtagtgctcattgtaaacattatcaaa-tgaatgaatgaagaagaatttagtttgttagaatagttatagttgtagctt 5411553  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 299
Target Start/End: Complemental strand, 16644558 - 16644318
Alignment:
Q  60 aagatagactcaagagaatataatagctcaacttgattaaagattatgatgagttaattgaattatac--atatttcagaggtgagtcatcatgttttaa 157  Q
    |||||||  |||||||||||||| |  |||| | ||| |||||||||||||||||||||| ||| ||   |||||  |||||||||| |||||||| ||     
T  16644558 aagataggttcaagagaatataacaattcaagtagat-aaagattatgatgagttaattgtattctatctatattatagaggtgagtaatcatgttctag 16644460  T
Q  158 aagaatctagagagatcctttgtgatgagtcattggaatgtcaatactataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaagaa 257  Q
    ||| || || |||||||||||||||||| | ||||||||  ||| | |||||||||||   |  |||||||||| || |||||| |||||||||||||||    
T  16644459 aaggatatatagagatcctttgtgatgaattattggaataccaacattataaataatgtaataatcattgtaattattatcaaa-taaatgaatgaagaa 16644361  T
Q  258 at-agtt-tgttagaatagttatagttatagcttttagtcactt 299  Q
    || |||| || |||| ||||  ||||||||||||||||||||||    
T  16644360 attagttatgatagattagtc-tagttatagcttttagtcactt 16644318  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 37860505 - 37860413
Alignment:
Q  97 taaagattatgatgagttaattgaattatacatatttcagaggtgagtcatcatgttttaaaagaatctagagagatcctttgtgatgagtcattgg 193  Q
    ||||||||||||||||||| |||  ||| | |||||  |||||||||||||||||||||| |||  | |||||||| || || ||||||||||||||    
T  37860505 taaagattatgatgagttagttg--ttagatatatt--agaggtgagtcatcatgttttagaagggtgtagagagacccgttatgatgagtcattgg 37860413  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 307
Target Start/End: Complemental strand, 45134758 - 45134656
Alignment:
Q  204 ctataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaagaaa-tagtttgttagaatagttatagttatagcttttagtcactttta 302  Q
    ||||||||||| ||||||| ||||||||||  ||| |||| |||||||||| ||| |||||||||||| ||||| ||||| |||||| |  || ||||||    
T  45134758 ctataaataataggttggttattgtaatcaatatc-aaatgaatgaatgaataaattagtttgttagattagtt-tagttttagcttattctctctttta 45134661  T
Q  303 gaata 307  Q
    |||||    
T  45134660 gaata 45134656  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 37860401 - 37860279
Alignment:
Q  193 gaatgtcaatactataaataatgggttggtcattgtaatcataatcaa---aataaatgaatgaagaa-atagtt-tgttagaatagttatagttatagc 287  Q
    |||||||||| |||||||| |||   |||||||||||||||| |||||   ||| |||||||||||||  ||||| ||||||||| | ||||||| ||||    
T  37860401 gaatgtcaatgctataaattatgtagtggtcattgtaatcattatcaaatgaatgaatgaatgaagaatttagttatgttagaat-gatatagttgtagc 37860303  T
Q  288 ttttagtcacttttagaataattt 311  Q
    ||||  || |||||||| ||||||    
T  37860302 ttttgctcccttttagagtaattt 37860279  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 42022821 - 42022935
Alignment:
Q  162 atctagagagatcctttgtgatgagtcattggaatgtcaatactataaataatgggttggtc-attgtaatcataatcaaaataaatgaatgaagaaata 260  Q
    |||||||||| ||| ||||||||||||||| |||| |||| |||||||||||  | ||| || | |||||| || ||  |||| ||||||||||||| ||    
T  42022821 atctagagagttccattgtgatgagtcattagaatatcaaaactataaataagtgattgatcaaatgtaatgattat-gaaatgaatgaatgaagaatta 42022919  T
Q  261 gtttgttagaatagtt 276  Q
    ||||||||||||||||    
T  42022920 gtttgttagaatagtt 42022935  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 37486137 - 37486067
Alignment:
Q  205 tataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaagaaa--tagtttgttagaata 273  Q
    |||||||||  | ||||| ||||||||||| ||||||  |||||||||||||||  |||||||||||||||    
T  37486137 tataaataaatgattggtgattgtaatcattatcaaatgaaatgaatgaagaaaattagtttgttagaata 37486067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 31231189 - 31231087
Alignment:
Q  172 atcctttgtgatgagtcattggaatgtcaatactataaataatgggttggtcattgtaatcataatcaaaataaatgaatgaagaaa-tagtttgttaga 270  Q
    |||||||||||  ||||||||||||| |||| ||||||||||  | ||||| ||||||||| | ||| |||| |||||| ||||||| ||||||| ||||    
T  31231189 atcctttgtgacaagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatc-aaatgaatgaa-gaagaaattagtttgctaga 31231092  T
Q  271 atagt 275  Q
    |||||    
T  31231091 atagt 31231087  T

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