View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14803_low_10 (Length: 421)
Name: NF14803_low_10
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 58 - 403
Target Start/End: Complemental strand, 47423164 - 47422808
Alignment:
| Q |
58 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgt-----------------ttatactacc |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47423164 |
tgggacaagtaaacaaattcaaaaatatattttctcaccggctaattcactgattgcatgataaacatgatgtatcattcttaatcatgtttatactacc |
47423065 |
T |
|
| Q |
141 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctgctgcttattatacaaacaactgagttgatgaaaataaggacaa |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47423064 |
ccattggagaatcagaagactgagcttggggtggatcaattatttttcctgctgctg------attatacaaagaactgagttgatgaaaataaggacaa |
47422971 |
T |
|
| Q |
241 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47422970 |
gtcctagaatccattgaccttttcttcttattcacaacaatatcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttg |
47422871 |
T |
|
| Q |
341 |
cacttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttat |
403 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47422870 |
cgcttctcttgtatcccaactcaaacatcccttcagagattctctcccacaaaggtcccttat |
47422808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 389
Target Start/End: Original strand, 36127406 - 36127513
Alignment:
| Q |
282 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcacttctcttgtatcccaactcaaacatcccttcagagatt |
381 |
Q |
| |
|
||||||||| ||| | |||||||| || || || ||||| || ||||| || ||||||||||||||||||||||| ||||| ||||| |||| || ||| |
|
|
| T |
36127406 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
36127505 |
T |
|
| Q |
382 |
ctctccca |
389 |
Q |
| |
|
|||||||| |
|
|
| T |
36127506 |
ctctccca |
36127513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 12683339 - 12683295
Alignment:
| Q |
298 |
aaatacttatttatgttttcccatttttctttacacctctttgca |
342 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||||||||||| |
|
|
| T |
12683339 |
aaatacttgttaatgttttcccatttctctttgcacctctttgca |
12683295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University