View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14803_low_11 (Length: 396)
Name: NF14803_low_11
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 45402249 - 45401886
Alignment:
| Q |
15 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45402249 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc |
45402150 |
T |
|
| Q |
115 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45402149 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
45402050 |
T |
|
| Q |
215 |
gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagctt |
314 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
45402049 |
gctgtcttttggtagctagagctgcaatccgaagattgatatcgttgaattcttgatggttggacactggtggttaccgaaatcgatgattgctaagctt |
45401950 |
T |
|
| Q |
315 |
cagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45401949 |
cagctaaagcataagcatgaacaaatgaatgaatgaataacgaataacagaatcaacaaattat |
45401886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 19611397 - 19611035
Alignment:
| Q |
15 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
19611397 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaaaaattgcaaaacaggttcaaatttc |
19611298 |
T |
|
| Q |
115 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19611297 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
19611198 |
T |
|
| Q |
215 |
gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagctt |
314 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
19611197 |
gctgtcttttgatagctagagctgcaatccgaagatcgatatcgttgaattgttgat-gttggacattggcggttgccgaaatcgatgattgttaagctt |
19611099 |
T |
|
| Q |
315 |
cagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattat |
378 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19611098 |
cagctaaagcagaagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattat |
19611035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 23361836 - 23361470
Alignment:
| Q |
15 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttc |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
23361836 |
aaaggcattgcagaaagagacctctgaaatcgtatccaacactgaaacctcaaccaacaccaaaacctgcaaaaataattgcaaaacaggttcaaatttc |
23361737 |
T |
|
| Q |
115 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23361736 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
23361637 |
T |
|
| Q |
215 |
gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggaca---ctggcggttgccgaaatcgatgattgctaag |
311 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23361636 |
gctgtcttttggtagctagagctgcaatctgaagatcgatatcgttgaattattgatggttggacactgctggcggttgccgaaatcgatgattgctaag |
23361537 |
T |
|
| Q |
312 |
cttcagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattat |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23361536 |
cttcagctaaagcataagcatgaacaaatgaatgaatgaataacgaataacagaatcaacaaattat |
23361470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 47351546 - 47351506
Alignment:
| Q |
48 |
atccaacaccgaaacctcaaccaacaccaaaacctgcaaaa |
88 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
47351546 |
atccaacaccaaaaccgcaaccaacaccgaaacctgcaaaa |
47351506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 7600151 - 7599794
Alignment:
| Q |
15 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7600151 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc |
7600052 |
T |
|
| Q |
115 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7600051 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttggaagaaaaaacttcactgtcaaatttcacaataatacaac--gggaaacaat |
7599954 |
T |
|
| Q |
215 |
gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagctt |
314 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7599953 |
gctgccttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagctt |
7599854 |
T |
|
| Q |
315 |
cagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattat |
378 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7599853 |
cagctaaagcataagcatgaaca----aatgaatgaataaagaataacagaatcaacaaattat |
7599794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 28462372 - 28462728
Alignment:
| Q |
15 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaacttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28462372 |
aaaggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc |
28462471 |
T |
|
| Q |
115 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28462472 |
attgagacaatttatcaaacacctcctatgcaacacaataataccttggaaga-aaaacttcactgtcaaatttcacaataatacaac--gggaaacaat |
28462568 |
T |
|
| Q |
215 |
gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagctt |
314 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462569 |
gctgccttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttggacactggcggttgccgaaatcgatgattgctaagctt |
28462668 |
T |
|
| Q |
315 |
cagctaaagcataagcatgaacaaatgaatgaatgaataaagaataacagaatcaacaaattat |
378 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28462669 |
cagctaaagcataagcatgaaca----aatgaatgaataaagaataacagaatcaacaaattat |
28462728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 54188531 - 54188605
Alignment:
| Q |
89 |
acaattgcaaaacaggttcaaacttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc |
163 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||| ||||| ||||||| || ||| |||||||||||||||| |
|
|
| T |
54188531 |
acaattgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttgc |
54188605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 8835756 - 8835833
Alignment:
| Q |
21 |
agtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaa |
98 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8835756 |
agtgcagaaagagacctttgaaatcccatccaacaccgaaacctcaaccaacacaaaaaactgcaaaaacaattgcaa |
8835833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 7710967 - 7710913
Alignment:
| Q |
112 |
ttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgcaag |
166 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7710967 |
ttcattgagtcaaattatcaaacacctcatatgcaacacaatcataccttgcaag |
7710913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 3367619 - 3367693
Alignment:
| Q |
89 |
acaattgcaaaacaggttcaaacttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc |
163 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
3367619 |
acaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttgc |
3367693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University