View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14803_low_12 (Length: 381)

Name: NF14803_low_12
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14803_low_12
NF14803_low_12
[»] chr7 (13 HSPs)
chr7 (1-363)||(20455739-20456101)
chr7 (1-363)||(20414110-20414472)
chr7 (129-227)||(7311865-7311963)
chr7 (178-246)||(21219285-21219353)
chr7 (127-234)||(7327548-7327655)
chr7 (206-247)||(13888635-13888676)
chr7 (268-320)||(16846945-16846997)
chr7 (283-334)||(21210915-21210966)
chr7 (206-241)||(24390874-24390909)
chr7 (275-320)||(20338462-20338507)
chr7 (206-250)||(7332678-7332722)
chr7 (268-320)||(13888574-13888626)
chr7 (206-246)||(22473719-22473759)
[»] chr4 (2 HSPs)
chr4 (206-333)||(2910466-2910596)
chr4 (206-246)||(19356937-19356977)
[»] scaffold0128 (1 HSPs)
scaffold0128 (271-320)||(3656-3705)
[»] chr5 (2 HSPs)
chr5 (206-246)||(29598119-29598159)
chr5 (206-246)||(29641813-29641853)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 20455739 - 20456101
Alignment:
Q  1 tccgattctaaattcgtcaaaatacaccttaatagatcatttgcatggaacccatatttctcactagtcatgtacaacagacccaccgaaaccggtgttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20455739 tccgattctaaattcgtcaaaatacaccttaatagatcatttgcatggaacccatatttctcactagtcatgtacaacagacccaccgaaaccgatgttt 20455838  T
Q  101 tcagtttcatacccttctccgttagcagtttattcgaaaaccgttatatcactcctcctaaagatccttactatgagttgaatgataaggattgtcgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20455839 tcagtttcatacccttctccgttagcagtttattcgaaaaccgttatatcactcctcctaaagatccttactatgagttgaatgataaggattgtcgtaa 20455938  T
Q  201 atttattggttcctgcaatggattggtttgcttgcttggttattctcttgccgatcataatgcagttatgtggtttcgtttttggaaccctgccaccagg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20455939 atttattggttcctgcaatggattggtttgcttgcttggttattctctcgccgatcatagtgcagttatgtggtttcgtttttggaaccctgccaccagg 20456038  T
Q  301 aaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgttt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20456039 aaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgttt 20456101  T

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Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 20414110 - 20414472
Alignment:
Q  1 tccgattctaaattcgtcaaaatacaccttaatagatcatttgcatggaacccatatttctcactagtcatgtacaacagacccaccgaaaccggtgttt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| || ||    
T  20414110 tccgattctaaatttgtcaaaatacaccttaatagatcatttgcaaggaacccatgtttctcactagtcatgtacaacagacccacagaaaccgatgatt 20414209  T
Q  101 tcagtttcatacccttctccgttagcagtttattcgaaaaccgttatatcactcctcctaaagatccttactatgagttgaatgataaggattgtcgtaa 200  Q
     ||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| ||||| |||||||||||||||  |||||| |    
T  20414210 gcagtttcatgcccttctccattagcagtttattggagaaccgttatatcactcctcttaaagatcctcactatcagttgaatgataagggctgtcgtga 20414309  T
Q  201 atttattggttcctgcaatggattggtttgcttgcttggttattctcttgccgatcataatgcagttatgtggtttcgtttttggaaccctgccaccagg 300  Q
    | || |||||||||||||||||||||| |||||||| ||||||||||| ||| || ||||||||||| ||||| | |||||||||||||| ||||||||     
T  20414310 agttgttggttcctgcaatggattggtctgcttgctcggttattctctcgccaatgataatgcagttgtgtggctccgtttttggaacccggccaccaga 20414409  T
Q  301 aaaatttctgataaattaggatatttgcatgatgacaattatagacggaactcttggatgttt 363  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20414410 aaaatttctgataaattaggatatttgcatgctgacaattatagacggaactcttggatgttt 20414472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 7311963 - 7311865
Alignment:
Q  129 tttattcgaaaaccgttatatcactcctcctaaagatccttactatgagttgaatgataaggattgtcgtaaatttattggttcctgcaatggattggt 227  Q
    |||||| || |||||| |||||||   |||||| |||||||| |||  |||| |||| |||||||||||| || |||||||||||||||||||||||||    
T  7311963 tttattagataaccgtcatatcacctttcctaaggatccttattatctgttgcatgacaaggattgtcgtgaagttattggttcctgcaatggattggt 7311865  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 21219353 - 21219285
Alignment:
Q  178 ttgaatgataaggattgtcgtaaatttattggttcctgcaatggattggtttgcttgcttggttattct 246  Q
    |||||||||||||||||| || || || |||||||||||||||||||||| || ||||  |||||||||    
T  21219353 ttgaatgataaggattgttgtgaagttgttggttcctgcaatggattggtctgtttgcgcggttattct 21219285  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 7327548 - 7327655
Alignment:
Q  127 agtttattcgaaaaccgttatatcactcctcctaaagatccttactatgagttgaatgataaggattgtcgtaaatttattggttcctgcaatggattgg 226  Q
    |||||||| || |||| | |||||||   |||||| |||||||| |||   ||| |||| |||||||||||| || |||||||||| |||||||||||||    
T  7327548 agtttattagataaccctcatatcacctttcctaaggatccttattatctattgcatgacaaggattgtcgtgaagttattggttcatgcaatggattgg 7327647  T
Q  227 tttgcttg 234  Q
    | ||||||    
T  7327648 tctgcttg 7327655  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 13888676 - 13888635
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggttattctc 247  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  13888676 ttggttcctgcaatggattggtctgcttgctcggttattctc 13888635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 16846997 - 16846945
Alignment:
Q  268 atgtggtttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 320  Q
    |||||||| ||||||||||||||||| ||||||| ||| || |||||||||||    
T  16846997 atgtggttccgtttttggaaccctgctaccaggacaatatcagataaattagg 16846945  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 21210966 - 21210915
Alignment:
Q  283 tggaaccctgccaccaggaaaatttctgataaattaggatatttgcatgatg 334  Q
    |||||||| |||||||| || || |||||||||||||| |||||||||||||    
T  21210966 tggaaccccgccaccagaaatatatctgataaattagggtatttgcatgatg 21210915  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 24390874 - 24390909
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggtt 241  Q
    |||||||||||||||| |||||||||||||||||||    
T  24390874 ttggttcctgcaatggtttggtttgcttgcttggtt 24390909  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 20338462 - 20338507
Alignment:
Q  275 ttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 320  Q
    |||||||||||||||||||||| |||||||| ||||  ||||||||    
T  20338462 ttcgtttttggaaccctgccacaaggaaaatatctgcaaaattagg 20338507  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 7332678 - 7332722
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggttattctcttg 250  Q
    |||||||||||||||||||||| | |||||| ||||||| |||||    
T  7332678 ttggttcctgcaatggattggtcttcttgctcggttattttcttg 7332722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 13888626 - 13888574
Alignment:
Q  268 atgtggtttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 320  Q
    |||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||    
T  13888626 atgtggttccgtttctggaatcccgccaccagaaaaatatctgataaattagg 13888574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 22473759 - 22473719
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggttattct 246  Q
    |||||||||||||||||||| | ||||||||| ||||||||    
T  22473759 ttggttcctgcaatggattgatctgcttgctttgttattct 22473719  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 333
Target Start/End: Original strand, 2910466 - 2910596
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggttattctcttgccgatca---taatgcagttatgtggtttcgtttttggaaccctgccaccaggaa 302  Q
    ||||||| |||||||||||||| ||||| |  ||||||||| || ||||| |   |||| || |||||||| | ||||| |||||||||||||| ||||     
T  2910466 ttggttcttgcaatggattggtctgcttacgcggttattcttttcccgatgaagataatacacttatgtggctccgtttgtggaaccctgccacaaggac 2910565  T
Q  303 aatttctgataaattaggatatttgcatgat 333  Q
    ||| ||| |||||||||| | |||| |||||    
T  2910566 aatatctaataaattagggtttttgtatgat 2910596  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 19356937 - 19356977
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggttattct 246  Q
    ||||||| |||||||||||| |||| |||||||||||||||    
T  19356937 ttggttcttgcaatggattgctttgtttgcttggttattct 19356977  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 3656 - 3705
Alignment:
Q  271 tggtttcgtttttggaaccctgccaccaggaaaatttctgataaattagg 320  Q
    ||||| ||||| |||||||| |||||||| ||||| ||||||||||||||    
T  3656 tggttacgtttctggaaccccgccaccagaaaaatatctgataaattagg 3705  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 29598159 - 29598119
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggttattct 246  Q
    ||||||| |||||||||||| |||| |||||||||||||||    
T  29598159 ttggttcatgcaatggattgctttgtttgcttggttattct 29598119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 29641813 - 29641853
Alignment:
Q  206 ttggttcctgcaatggattggtttgcttgcttggttattct 246  Q
    ||||||| |||||||||||| |||| |||||||||||||||    
T  29641813 ttggttcatgcaatggattgctttgtttgcttggttattct 29641853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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