View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14803_low_14 (Length: 323)

Name: NF14803_low_14
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14803_low_14
NF14803_low_14
[»] chr1 (4 HSPs)
chr1 (13-307)||(29452455-29452752)
chr1 (83-308)||(29423961-29424186)
chr1 (94-307)||(29467013-29467226)
chr1 (92-307)||(29442545-29442760)
[»] chr2 (23 HSPs)
chr2 (108-307)||(14551068-14551266)
chr2 (94-245)||(10336621-10336772)
chr2 (160-287)||(8572755-8572882)
chr2 (141-261)||(10372676-10372796)
chr2 (163-268)||(9292715-9292820)
chr2 (141-256)||(9321790-9321905)
chr2 (160-261)||(9316816-9316920)
chr2 (160-244)||(9283428-9283512)
chr2 (163-263)||(10353937-10354037)
chr2 (141-236)||(9329418-9329513)
chr2 (160-235)||(12011847-12011922)
chr2 (141-238)||(10348620-10348717)
chr2 (141-216)||(9060333-9060408)
chr2 (140-245)||(9275333-9275438)
chr2 (171-236)||(9357935-9358000)
chr2 (162-235)||(12018170-12018243)
chr2 (160-216)||(9365434-9365490)
chr2 (162-245)||(7114901-7114984)
chr2 (129-235)||(7612716-7612822)
chr2 (160-246)||(12005419-12005505)
chr2 (160-230)||(11986779-11986849)
chr2 (128-235)||(8578747-8578854)
chr2 (129-228)||(17565337-17565436)
[»] scaffold0667 (1 HSPs)
scaffold0667 (141-264)||(5250-5373)
[»] chr8 (1 HSPs)
chr8 (160-283)||(41965976-41966099)
[»] chr3 (1 HSPs)
chr3 (104-284)||(37463293-37463473)
[»] chr4 (1 HSPs)
chr4 (160-263)||(26575671-26575774)
[»] chr5 (1 HSPs)
chr5 (150-230)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 29452455 - 29452752
Alignment:
Q  13 gaaatgaaaaaaccctaaaccctagctacaaccttccttccttcctt----ttcctnnnnnnnncccttccttccttccaagctccaatggcggatcttc 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    |||||        ||||||||||||||||||||||||||||||||||||    
T  29452455 gaaatgaaaacaccctaaaccctagctacaaccttccttccttccttccttttcctaaaaaaa-cccttccttccttccaagctccaatggcggatcttc 29452553  T
Q  109 cgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctca 208  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452554 cgccggagatacttaccggtatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctca 29452653  T
Q  209 caacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452654 caacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaac 29452752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 83 - 308
Target Start/End: Complemental strand, 29424186 - 29423961
Alignment:
Q  83 cttccaagctccaatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaa 182  Q
    |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29424186 cttccaagctccaatgacggatcttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaa 29424087  T
Q  183 tcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctacc 282  Q
    ||||||||||| ||||||||||| |||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  29424086 tcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttctacc 29423987  T
Q  283 aaatcaacgatttctctaacctaact 308  Q
    ||||||||||||||||||||||||||    
T  29423986 aaatcaacgatttctctaacctaact 29423961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 94 - 307
Target Start/End: Original strand, 29467013 - 29467226
Alignment:
Q  94 caatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatc 193  Q
    ||||||| |||||||| || || ||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29467013 caatggctgatcttcctccggaaataatcaccggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatc 29467112  T
Q  194 cctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgat 293  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||    
T  29467113 cctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgat 29467212  T
Q  294 ttctctaacctaac 307  Q
    ||||||||||||||    
T  29467213 ttctctaacctaac 29467226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 92 - 307
Target Start/End: Original strand, 29442545 - 29442760
Alignment:
Q  92 tccaatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaa 191  Q
    |||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||    
T  29442545 tccaatggtggatcttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaa 29442644  T
Q  192 tccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacg 291  Q
    |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||| | |    
T  29442645 tccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaag 29442744  T
Q  292 atttctctaacctaac 307  Q
    ||||||||||||||||    
T  29442745 atttctctaacctaac 29442760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 108 - 307
Target Start/End: Complemental strand, 14551266 - 14551068
Alignment:
Q  108 ccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctc 207  Q
    ||||| |||||||||||| | ||||||||||||||||||  |||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||| |    
T  14551266 ccgccggagatactcaccagaatcctctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattccc 14551167  T
Q  208 acaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaac 307  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||| ||   | |||||||||||||||||||||||||||||||    
T  14551166 acaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaac 14551068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 10336772 - 10336621
Alignment:
Q  94 caatggcggatcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatc 193  Q
    ||||||||||||||||||| || || ||| |||  ||| |||| |  ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||    
T  10336772 caatggcggatcttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatc 10336673  T
Q  194 cctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 245  Q
    | |||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  10336672 cttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 8572755 - 8572882
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 259  Q
    |||||||||| ||||| |||||||||||| ||||  |||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||  |    
T  8572755 tccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcat 8572854  T
Q  260 tcgacacaactctgttttctaccaaatc 287  Q
    ||||| |||||  | | |||||||||||    
T  8572855 tcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 10372796 - 10372676
Alignment:
Q  141 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 240  Q
    ||||||||| |||| ||  |||||||||| ||||| ||||||||| || ||||  |||||||||| ||||| |||||||| |||||||||||||||||||    
T  10372796 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccc 10372697  T
Q  241 tcaatcgttccttaattcttc 261  Q
    ||||||| |||||||| ||||    
T  10372696 tcaatcgatccttaatccttc 10372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 9292820 - 9292715
Alignment:
Q  163 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 262  Q
    ||||||| ||||  |||||||||||| ||||||||||||||||||||| |||||  || ||||||||| ||||||||||||| || |||||||| |||||    
T  9292820 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 9292721  T
Q  263 acacaa 268  Q
    ||||||    
T  9292720 acacaa 9292715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 9321905 - 9321790
Alignment:
Q  141 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 240  Q
    ||||||||| |||| ||  ||| |||||| ||||| || ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||| |||||||||    
T  9321905 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccc 9321806  T
Q  241 tcaatcgttccttaat 256  Q
    ||| ||| ||||||||    
T  9321805 tcagtcgatccttaat 9321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 9316920 - 9316816
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaa---aattccctcaatcgttccttaat 256  Q
    |||||||||| ||||| |||||||||||| ||||  |||| |||||||||||||||||||| ||||||||| ||   |||||||||||||| ||||||||    
T  9316920 tccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaat 9316821  T
Q  257 tcttc 261  Q
     ||||    
T  9316820 ccttc 9316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 9283428 - 9283512
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaa 244  Q
    |||||||||| ||||| || |||||||||| ||||||||| ||||||||||| |||||||| ||||||||| ||| |||||||||    
T  9283428 tccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 10354037 - 10353937
Alignment:
Q  163 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 262  Q
    ||||||| ||||| ||||||||| || ||||||||||||||||  |||| |||||||| |||||||||  |||||||| |||||  ||||||||||||||    
T  10354037 gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg 10353938  T
Q  263 a 263  Q
    |    
T  10353937 a 10353937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 9329513 - 9329418
Alignment:
Q  141 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 236  Q
    ||||||||| |||| ||  |||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||  || ||||||||| |||||    
T  9329513 ttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 12011847 - 12011922
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 235  Q
    |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||| ||||    
T  12011847 tccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 10348717 - 10348620
Alignment:
Q  141 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 238  Q
    ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  10348717 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 9060333 - 9060408
Alignment:
Q  141 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 216  Q
    |||||||| ||||| ||  |||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||    
T  9060333 ttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttca 9060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 9275438 - 9275333
Alignment:
Q  140 gttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattcc 239  Q
    |||||| |||||||| ||  || ||||||| |||| ||||||||||||| ||||  | || ||||| |||||||||||||| ||||| ||| ||||||||    
T  9275438 gttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattcc 9275339  T
Q  240 ctcaat 245  Q
    ||||||    
T  9275338 ctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 9358000 - 9357935
Alignment:
Q  171 tcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 236  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||| |||||    
T  9358000 tcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 12018170 - 12018243
Alignment:
Q  162 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 235  Q
    |||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||| ||| ||||    
T  12018170 cgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 9365490 - 9365434
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 216  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  9365490 tccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttca 9365434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 7114901 - 7114984
Alignment:
Q  162 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 245  Q
    |||||||| ||||| |||||||||||| ||||| |||||||||| ||||| |||||||| ||||| ||  |||||||| |||||    
T  7114901 cgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 7612822 - 7612716
Alignment:
Q  129 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 228  Q
    ||||||||||  |||||||||||| ||||| |||||||||| ||||  || ||||| ||| ||||| |||| ||||| ||||||||||  || |||||||    
T  7612822 atcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacc 7612723  T
Q  229 tccaaaa 235  Q
    || ||||    
T  7612722 tcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 12005419 - 12005505
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatc 246  Q
    |||||||||| ||||| ||| |||| ||| ||||| ||||||||||||||||||||| ||| ||||| ||  ||||||| |||||||    
T  12005419 tccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaattctctcaatc 12005505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 11986779 - 11986849
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 230  Q
    |||||||||| ||||| ||| |||| ||| ||||| |||| |||||||||||||||| ||| |||||||||    
T  11986779 tccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttcacctc 11986849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 8578747 - 8578854
Alignment:
Q  128 tatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcac 227  Q
    ||||||||| |  |||||||||||||||||  |||||||||| ||||  || |||||||||| |||| | || ||||| |||| ||||| ||||| | ||    
T  8578747 tatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattac 8578846  T
Q  228 ctccaaaa 235  Q
    ||| ||||    
T  8578847 ctcaaaaa 8578854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 17565337 - 17565436
Alignment:
Q  129 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 228  Q
    ||||||||||  ||||| |||||||||||| ||||| |||| ||||| || ||||||||| |||   |||| ||||| || ||||||| ||| |||||||    
T  17565337 atcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcacc 17565436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 5373 - 5250
Alignment:
Q  141 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 240  Q
    ||||||||| |||| ||  |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| | |||||||||    
T  5373 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccc 5274  T
Q  241 tcaatcgttccttaattcttcgac 264  Q
    ||||| | ||||| || |||||||    
T  5273 tcaatagatccttcatccttcgac 5250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 41965976 - 41966099
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 259  Q
    |||||||||| |||||||| |||||||||| |||| |||||||||| |||||||||||||| |||||||||  ||| ||||||||||| |||||||| ||    
T  41965976 tccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatcct 41966075  T
Q  260 tcgacacaactctgttttctacca 283  Q
    ||||| |||| ||| | |||||||    
T  41966076 tcgactcaacactgatctctacca 41966099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 284
Target Start/End: Complemental strand, 37463473 - 37463293
Alignment:
Q  104 tcttccgcctgagatactcaccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgat 203  Q
    ||||||||| || |||||| |||  |||||||| |  ||||| ||| |||| ||  |||||||||| ||||| |||||||||||| ||||  ||||||||    
T  37463473 tcttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgat 37463374  T
Q  204 tctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaa 284  Q
    ||||||||||||||||| ||||| ||| ||||| |||||||||  ||| ||||  ||||| ||||||| | | ||||||||    
T  37463373 tctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaa 37463293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 26575774 - 26575671
Alignment:
Q  160 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 259  Q
    |||||||||| ||||| |||||||||||| ||| | ||||||||||  |||| |||||||| |||||||||  |||||||| |||||| |||||||| ||    
T  26575774 tccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatcct 26575675  T
Q  260 tcga 263  Q
    ||||    
T  26575674 tcga 26575671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 36225655 - 36225575
Alignment:
Q  150 caatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 230  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||  |||||||||| ||||||||||  || |||||||||    
T  36225655 caatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctc 36225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University