View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_18 (Length: 302)
Name: NF14803_low_18
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_18 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 135 - 302
Target Start/End: Original strand, 50981722 - 50981889
Alignment:
| Q |
135 |
gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaactaattgatcatgcgagccctaggaa |
234 |
Q |
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| T |
50981722 |
gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaactaattgatcatgcgaaccctaggaa |
50981821 |
T |
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| Q |
235 |
aacctacgtcctccaaaaatgatgataattatagtgttattggtaagaattttaagagtaataagttt |
302 |
Q |
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| T |
50981822 |
aacctacgtcctccaaaaatgacgataattatagtgttattggtaagaattttaagagtaataagttt |
50981889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 135 - 302
Target Start/End: Original strand, 51084856 - 51085023
Alignment:
| Q |
135 |
gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaactaattgatcatgcgagccctaggaa |
234 |
Q |
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| T |
51084856 |
gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaactaattgatcatgcgaaccctaggaa |
51084955 |
T |
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| Q |
235 |
aacctacgtcctccaaaaatgatgataattatagtgttattggtaagaattttaagagtaataagttt |
302 |
Q |
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| T |
51084956 |
aacctacgtcctccaaaaatgacgataattatagtgttattggtaagaattttaagagtaataagttt |
51085023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 50981602 - 50981655
Alignment:
| Q |
16 |
taggccaaagccagaaaggaaaagagatgtgccaatatatatcaaggagatggg |
69 |
Q |
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| T |
50981602 |
taggccaaagccagaaaggaaaagagatgtgccaatatatataaaggagatggg |
50981655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 51084736 - 51084789
Alignment:
| Q |
16 |
taggccaaagccagaaaggaaaagagatgtgccaatatatatcaaggagatggg |
69 |
Q |
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| T |
51084736 |
taggccaaagccagaaaggaaaagagatgtgccaatatatataaaggagatggg |
51084789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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