View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_22 (Length: 283)
Name: NF14803_low_22
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 50982178 - 50981913
Alignment:
| Q |
18 |
agttactttcttcaataacatgatgctcttatatggtactcctagtcctacacagctttttaattattttctggttactcacaaaacacataatataatc |
117 |
Q |
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| T |
50982178 |
agttactttcttcaataacatgatgctcttatatggtactcctagtcctacacagctttttaattattttctggttactcacaaaacacataatataatc |
50982079 |
T |
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| Q |
118 |
ttatccccatatatgtcgtttgaccaacaattaatgtctaaaaccggatcatgcaaaggtttactagtgcttgcatctgtatatttccgattttacttac |
217 |
Q |
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| T |
50982078 |
ttatccccatatatgtcgtttgaccaacaattaatgtctaaaaccggatcatgcaaaggtttactagtgcttgcatctgtgtatttccgattttacttac |
50981979 |
T |
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| Q |
218 |
tgatagtactgtttaaggaaagaatataaattaaagctgcttgatgattgcattcaactacaattt |
283 |
Q |
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| T |
50981978 |
tgatactactgtttaaggaaagaatataaattaaagctgcttgatgattgcattcaactacaattt |
50981913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 51085312 - 51085047
Alignment:
| Q |
18 |
agttactttcttcaataacatgatgctcttatatggtactcctagtcctacacagctttttaattattttctggttactcacaaaacacataatataatc |
117 |
Q |
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| T |
51085312 |
agttactttcttcaataacatgatgctcttatatggtactcctagtcctacacagctttttaattattttctggttactcacaaaacacataatataatc |
51085213 |
T |
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| Q |
118 |
ttatccccatatatgtcgtttgaccaacaattaatgtctaaaaccggatcatgcaaaggtttactagtgcttgcatctgtatatttccgattttacttac |
217 |
Q |
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| T |
51085212 |
ttatccccatatatgtcgtttgaccaacaattaatgtctaaaaccggatcatgcaaaggtttactagtgcttgcatctgtgtatttccgattttacttac |
51085113 |
T |
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| Q |
218 |
tgatagtactgtttaaggaaagaatataaattaaagctgcttgatgattgcattcaactacaattt |
283 |
Q |
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| T |
51085112 |
tgatactactgtttaaggaaagaatataaattaaagctgcttgatgattgcattcaactacaattt |
51085047 |
T |
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