View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_28 (Length: 233)
Name: NF14803_low_28
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 27348520 - 27348736
Alignment:
| Q |
1 |
ggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttgaatcaattttca |
100 |
Q |
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| T |
27348520 |
ggagaaacggttcaaaatttttgcggagaaattagaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttgaatcaattttca |
27348619 |
T |
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| Q |
101 |
gatttaactcatgaagagttcgtttctgcatatggttgttcccgtcttgaaaaccatttactagagtcatccatcttcaattcaagtgaaattccaacta |
200 |
Q |
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| T |
27348620 |
gatttaacatatgaagagtttgtttctgcatatggttgttcccgtcttgaaaaccatttactagagtcatccatcttcaattcaagtgaaattccaacta |
27348719 |
T |
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| Q |
201 |
tcgagttacctaaggtg |
217 |
Q |
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| T |
27348720 |
tcgagttacctaaggtg |
27348736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 28418427 - 28418308
Alignment:
| Q |
5 |
aaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttgaatcaattttcagatt |
104 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||| ||||||| |
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| T |
28418427 |
aaacggttcaagatttttgcagagaaattggaatacatagagaatttcaaccgtgatggaaatgcgacttatgagttgggtctgaatcaatactcagatt |
28418328 |
T |
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| Q |
105 |
taactcatgaagagttcgtt |
124 |
Q |
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| T |
28418327 |
taactgatgaagagtacgtt |
28418308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28406569 - 28406661
Alignment:
| Q |
1 |
ggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttgaatca |
93 |
Q |
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| T |
28406569 |
ggagaaacagttcaagatttttgcagaaaaattggaatatgtagagaggttcaaccgtgatggaaatgagacttataagttgggtctgaatca |
28406661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28003715 - 28003823
Alignment:
| Q |
1 |
ggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttgaatcaattttca |
100 |
Q |
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|||||||||||| || |||||||| |||| ||||| ||||| |||| |||||||||| ||| ||||| ||||||||||||||| |||||||||||| |
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| T |
28003715 |
ggagaaacggtttaagatttttgcaaagaatttggagtacatcgagaatttcaaccgtgctggaaatgaaacttatgagttgggtctgaatcaatttttg |
28003814 |
T |
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| Q |
101 |
gatttaact |
109 |
Q |
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| T |
28003815 |
gatttaact |
28003823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 28284930 - 28284811
Alignment:
| Q |
1 |
ggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttgaatcaattttca |
100 |
Q |
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||||||||| ||||| |||||||| ||||| || ||||||||||||| || ||||||| ||| || |||||||| |||||||| |||||||||| || |
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| T |
28284930 |
ggagaaacgattcaagatttttgcagagaatttagaatacatagagaattttaaccgtgctggaaaacagacttataagttgggtctgaatcaattctct |
28284831 |
T |
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| Q |
101 |
gatttaactcatgaagagtt |
120 |
Q |
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|||||||| |||||||||| |
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| T |
28284830 |
gatttaacaaatgaagagtt |
28284811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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