View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14803_low_30 (Length: 203)
Name: NF14803_low_30
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_30 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 12832267 - 12832450
Alignment:
| Q |
22 |
tacacgtgtctttagcagggtcggtccaaggataaaaccactaaaaccttcattttaagcctccaaacaaaataatttttctttaaattttaaaaaggtg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || ||| | ||||||||||||||||||||||||||||||||| | |
|
|
| T |
12832267 |
tacacgtgtctttagcagggtcggtccaaggataaaacgactaaaaccctcatttaaaacctacgaacaaaataatttttctttaaattttaaaaaggcg |
12832366 |
T |
|
| Q |
122 |
tcatatttacataaaaagggtctcattttgct--caaagaaaacgggggttcatatatcaaaatttgttttagacgtcacttac |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
12832367 |
tcatatttagataaaaagggtctcattttgctgaaaaagaaaaagggggctcatatatcaaaatttgttttagacatcacttac |
12832450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 12839071 - 12839257
Alignment:
| Q |
22 |
tacacgtgtctttagcagggtcggtccaaggataaaaccactaaaaccttcattttaagcctccaaacaaaataatttttctttaaattttaaaaaggtg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| | ||||||||||||||||||||||||||||||||| | |
|
|
| T |
12839071 |
tacacgtgtctttagcagggtcggtccaaggataaaaccactaaagctctcgttttaagcctacgaacaaaataatttttctttaaattttaaaaaggcg |
12839170 |
T |
|
| Q |
122 |
tcatatttacat---aaaaagggtctcattttgctc--aaagaaaacgggggttcatatatcaaaatttgttttagacgtcacttac |
203 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||| | |||||||| |
|
|
| T |
12839171 |
tcatatttagataaaaaaaagggtctcattttgctcaaaaagaaaaagggggctcatgtatcaaaatttgttttaggcatcacttac |
12839257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 41873102 - 41873164
Alignment:
| Q |
49 |
aaggataaaaccactaaaaccttcattttaagcctccaaacaaaataatttttctttaaattt |
111 |
Q |
| |
|
|||||||| |||||||||| | |||| |||| ||| | |||||||||||||||| |||||||| |
|
|
| T |
41873102 |
aaggataagaccactaaaatcctcatattaaacctaccaacaaaataatttttccttaaattt |
41873164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 25817734 - 25817702
Alignment:
| Q |
170 |
tcatatatcaaaatttgttttagacgtcactta |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
25817734 |
tcatatatcaaaacttgttttagacgtcactta |
25817702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University