View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_4 (Length: 474)
Name: NF14803_low_4
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 40001611 - 40001332
Alignment:
| Q |
11 |
cagagaaggaaggtggtggtgtttccaagaaggaaaccaatcggcggattgggtcattgggattgtatagagagattttgttgtgttgggcatatgggac |
110 |
Q |
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| T |
40001611 |
cagagaaggaaggtggtggtgtttccaagaaggaaaccaatcggcggattgggtcattgggattgtatagagagattttgttgtgttgggcatatgggac |
40001512 |
T |
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| Q |
111 |
tccatgtgctcagtcccactcggatccctttgtttttgtcacattcacacactacatcacacatacactcccactccctttttattttattc-tacacca |
209 |
Q |
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| T |
40001511 |
tccatgtgctcagtcccactcggatccctttgtttttgtcacattcacacactacatcacacatacactcccactccctttttattttattcatacacca |
40001412 |
T |
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| Q |
210 |
ttcagttttcccaatacactattttaaaatagggttttgttaacgagtgtctttagtgttaagagcactcgttaaaggat |
289 |
Q |
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| T |
40001411 |
ttcagttttcccaatacactattttaaaataggattttgttaacgagtgtccttgatgttaagggcattcgttaaaggat |
40001332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 374 - 456
Target Start/End: Complemental strand, 40001191 - 40001109
Alignment:
| Q |
374 |
atgctaattgggttccgtaccaacatttcttgtacgaaattggatcaaattcttatactatcatactatactatgggaccttt |
456 |
Q |
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| T |
40001191 |
atgctaattgggatccgtaccaacatttcttgtacgaaattggatcaaattcttatactatcatactatactatgggaccttt |
40001109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 40001241 - 40001208
Alignment:
| Q |
323 |
ttaacatttccctttaaaatagagtaataaatac |
356 |
Q |
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| T |
40001241 |
ttaacatttccctttaaaatagagtaataaatac |
40001208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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