View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14803_low_5 (Length: 464)
Name: NF14803_low_5
Description: NF14803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14803_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 76 - 459
Target Start/End: Complemental strand, 44361153 - 44360779
Alignment:
| Q |
76 |
attaggccacattaacaccgttataaaagattcactcttgccgcgtatatatttaatttgttacttatatatacatacatatagcttaatttgcagtgtc |
175 |
Q |
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| T |
44361153 |
attaggccacattaacaccgttataaaagattcactcttgccgcgtatatattt-----gttacttatatatacata----tagcttaatttgcagtgtc |
44361063 |
T |
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| Q |
176 |
acataggagtattattaagataactaaagaggtatgacaaattaaattagtggagatggaaaaatgggtgtgtttgatgatgatgttggtagcaatattg |
275 |
Q |
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| T |
44361062 |
aaataggagtattattaagataactaaagaggtgtgacaaattaaattagtggagatggaaaaatgggtgtgtttgatgatgatgttggtagcaatattg |
44360963 |
T |
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| Q |
276 |
gaattaagttttggagtcaaaggtgcagaagaggtaacatatgatggaagatcccttatcatcaatggacaaagaaatattctcttctctggttctattc |
375 |
Q |
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| T |
44360962 |
gaattaagttttggagtcaaaggtgcagaagaggtaacatatgatggaagatctcttatcatcaatggacaaagaaatattctcttctctggttctattc |
44360863 |
T |
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| Q |
376 |
attacccccgtagcacccctcaggtaatcaaatctaattacaatatacctatattcatattattgcatctctcaatagtctctg |
459 |
Q |
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| T |
44360862 |
attacccccgtagcacccctcaggtaatcaaatctacgtacaatatacctatattcatattattgcatctctcaatagtctctg |
44360779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 40097571 - 40097615
Alignment:
| Q |
357 |
ctcttctctggttctattcattacccccgtagcacccctcaggta |
401 |
Q |
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| T |
40097571 |
ctcttctctggttcaattcattatcctcgtagcactcctcaggta |
40097615 |
T |
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